1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGTTGAAACTGCTCCTGCTAAAGAGAAGCCCAAAGCACCTCCTGCCATTCTGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGAgtgaggcattgtgatttttggtcctacctgaattatatttagcaaccatgaaagttgttttaatgtcttccattgttatcaaag
species | Glycine max |
transcript | GLYMA14G02530.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGA GTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCCEST: gi|17518632|gb|BM187674.1|BM187674
genomic: TGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGAgtgaggcatt ... gttatcaaagGTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCC
EST: TGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGA GTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCCEST: gi|21602714|gb|BQ613045.1|BQ613045
genomic: TGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGAgtgaggcatt ... gttatcaaagGTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCC
EST: TGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTANAGAAAGAGAAAGACGA GTTCCTATGACAAGGCTTCGGAAACGAGTTGCTEST: gi|7924247|gb|AW830273.1|AW830273
genomic: TGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGAgtgaggcatt ... gttatcaaagGTTCCTATGACAAGGCTTCGGAAACGAGTTGCT
EST: TGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGA GTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCCEST: gi|7588263|gb|AW704062.1|AW704062
genomic: TGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGAgtgaggcatt ... gttatcaaagGTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCC
EST: TGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGA GTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCCEST: gi|193696238|gb|FK639260.1|FK639260
genomic: TGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGAgtgaggcatt ... gttatcaaagGTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCC
EST: AGAAAGAGAAAGACGA GTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCC
genomic: AGAAAGAGAAAGACGAgtgaggcatt ... gttatcaaagGTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGAAACTGCTCCTGCTAAAGAGAAGCCCAAAGCACCTCCTGCCATTCTGAAGTCTCCCACCGAGCCCCAGCTTCCTCCTAAAGAAAGAGAAAGACGAgtgaggcattgtgatttttggtcctacctgaattatatttagcaaccatgaaagttgttttaatgtcttccattgttatcaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA