1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTCTAGTGGTAGCAGATTGGCTCAAAGGCTAATATTTGGAAAAACCAACCATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGGgtaatgtttttatgttgatatatccccttgacgattcctgtctaaagatacgtatatttatgcaaaactcccttatgcag
species | Glycine max |
transcript | GLYMA13G35120.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGG GAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGTEST: gi|22927886|gb|BU545025.1|BU545025
genomic: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGGgtaatgtttt ... ccttatgcagGAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGT
EST: CATGGGGACCTAAGAAAATATNNNTCTGGGTTTTTTGACACTACAGTGGG GAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGTEST: gi|14011393|gb|BG726307.1|BG726307
genomic: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGGgtaatgtttt ... ccttatgcagGAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGT
EST: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGG GAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGTEST: gi|15337282|gb|BI497938.1|BI497938
genomic: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGGgtaatgtttt ... ccttatgcagGAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGT
EST: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGG GAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGTEST: gi|5770700|gb|AI973874.1|AI973874
genomic: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGGgtaatgtttt ... ccttatgcagGAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGT
EST: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGG GAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGTEST: gi|208249709|gb|GE045444.1|GE045444
genomic: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGGgtaatgtttt ... ccttatgcagGAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGT
EST: AATGGGGACCTAAGAAAATATTTATCTGGG-TTTTTGACACTACAGTGGG GAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGTEST: gi|193469749|gb|FK438042.1|FK438042
genomic: -ATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGGgtaatgtttt ... ccttatgcagGAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGT
EST: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGG GAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGT
genomic: CATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGGgtaatgtttt ... ccttatgcagGAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTCGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTAGTGGTAGCAGATTGGCTCAAAGGCTAATATTTGGAAAAACCAACCATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGACACTACAGTGGGgtaatgtttttatgttgatatatccccttgacgattcctgtctaaagatacgtatatttatgcaaaactcccttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA