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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgttgagttcttcagtatcaaacaagtcaatctttcaagttttgaaccattttatgtaaattgagtttttcaaagttcaaacagagatattattttttccagcataacgtagttaacatttaatctcattttcttcag

Basic information

species Glycine max
transcript GLYMA13G34970.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34970.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 10
GGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgttgagt-tcttcagtatcaa------acaagtcaatctttcaagtt--ttgaaccattttatgtaaattgagtttttca-------aagttcaaacagagatattattttttccagcataacgtagttaacatttaatctcattttcttcag
 ||||| ||    || ||||||||||| || || ||||| |||||||| ||||| || |||||||||||||| || || ||||| || |  ||||| ||||||   | |  | | |||         || ||  |  |||   || |  ||| |     || | | |   ||   |   |       | ||    |  | ||    |  |||  |||    |  || |||||  ||  |   ||  ||  |||
TGGAATAACAATGATAGAGATGGCAAAAGGAGAACCTCCCCTTGCTGACCTTCATCCTATGAGAGTGCTTTTTATCATTCCCCGGGAAAGCCCTCCTCAGgtttcatattctaaatattgttttggcacgagaaaggcttgttagatagttggaatgcattgtttgagacgaacctaatactgccatatgtcttgattgcgaagccaccttt--cagagctagatatttaac--ttgtttatatcctccacag

upper sequence: GLYMA13G34970.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 5'ss of exon 10
GGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgtt--gagttcttcagtatcaaacaagtcaatctttcaagttttgaac-cattttatgtaaattgagtttttcaaagttcaaacagagatattattttttccagcataacgtagttaacatttaatctcattttcttcag
 ||||| || |  |||||||||||||| || || ||||| || ||||| ||||| || |||||||||||||| || || || ||||| | ||| |||||||||     |  ||   | | ||||| |  ||   ||  | |  | |      |||   | |   || |||| |    |     |||                                                      
CGGAATAACAGTTATTGAGATGGCAAAAGGAGAACCTCCCCTAGCTGACCTTCATCCCATGAGAGTGCTTTTTATCATTCCTCGAGAAACTCCACCACAGgtttcacatattttcattttaaacatgataaaagttatactggtcactgtgctttgcctcagcagaattttaccttttctgggcag------------------------------------------------------

upper sequence: GLYMA13G34970.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 10
GGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgttga------gttcttcagtatcaaacaagtcaatctttcaagttttgaaccattttatgtaaattgagtttttcaaagttcaaacagagatattattttttccagcataacgtagttaacatttaatctcattttcttcag
|||||| |||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||| ||||| || ||||||         ||| |   | ||| ||     ||| ||     | |  |   || ||   |||   ||||  || |     || |  || | |||||| |    ||    |     |  | | ||  | |  | || | |||
GGGAATAACTGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCAGATCTCCATCCAATGAGAGTGCTTTTTATAATACCTCGAGAAAATCCGCCTCAGgtttgccaatcattccttgatgtcatacttactaattttct---tgtcaattgatcttgaataatgagagtcattta----ccagatggaaa-attattctccatagttctaaaggatagatactttgtgtt-tgttgtgcag

upper sequence: GLYMA13G34970.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S84_190V6.1 (Physcomitrella patens), 5'ss of exon 8
-----------------GGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgttgagttcttcagtatcaaacaagtcaatctttcaagttttgaaccattttatgtaaattgagtttttcaaagttcaaacagagatattattttttccagcataacgtagttaacatttaatctcattttcttcag
                 |||||||||||| |||||||||||||| ||||| |          |  ||| ||    ||        ||||  |    |       |||| ||   |     || || |   |  || |  | | |||| |     ||  |  || |   | ||    |   ||||||                                                                    
GCAGATATATGTTCATTGGGAATCACTGCTATTGAGATGGCAAAAGGGGAACT--------GTATTCTCCAAGAGATTTTgtaagttttggtggggcagtagttgaatactagtcgttgagacttgtgacgagtcgagtacgccaattt----ggtcat--acgaagatgtgctgctaatgttttt--------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13477606|gb|BG507420.1|BG507420
EST:     TTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAG                         CTAGATGATCATTTTTCTCGTCCATTGAAAGAATTTGTTTCTTTGTGCTTA
genomic: TTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgttgagttct ... ttttcttcagCTAGATGATCATTTTTCTCGTCCATTGAAAGAATTTGTTTCTTTGTGCTTA