1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTCCTGCACTTGTCTTTGAAGGAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttctttctatttttcctagaactagaatcatatagggacagttctggctgcagggttgtctagagactcaagattgttgtttgaatgaagtatcaa...
species | Glycine max |
transcript | GLYMA13G27810.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|193485361|gb|FK452473.1|FK452473
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: AGGATCCTTCGAG-TTTAA- GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|23734787|gb|BU765638.1|BU765638
genomic: AGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|193477699|gb|FK442288.1|FK442288
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAG-TTTAA- GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|207820136|gb|GD790014.1|GD790014
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGTAAEST: gi|208038473|gb|GD833239.1|GD833239
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAA
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|151400516|gb|EV270330.1|EV270330
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|208287754|gb|GE081765.1|GE081765
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGCAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|16281629|gb|BI944586.1|BI944586
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|24136426|gb|BU926936.1|BU926936
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|208141207|gb|GD938251.1|GD938251
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|207822724|gb|GD793959.1|GD793959
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|151401192|gb|EV271006.1|EV271006
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAG GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGEST: gi|209715558|gb|BW682198.1|BW682198
genomic: GAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
EST: CGAGTTTTAAG GGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
genomic: CGAGTTTTAAGgtatttcttt ... attttttcagGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTGCACTTGTCTTTGAAGGAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGgtatttctttctatttttcctagaactagaatcatatagggacagttctggctgcagggttgtctagagactcaagattgttgtttgaatgaagtatcaa
- - - - - - - - - - GAGAGG
- - - - - - - - - - - AGAGGA
- - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT