Sequence
atgc intronic sequence ATGC exonic sequenceAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCAGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTTGGCGAGATCTATTTGACATTgtaagttcatgtaaattatttcttccatatttttattcttgaagaaaattaatgagacattctcgacattggaggaataaaatacactatctccacgtcattatttttccctaaattaacaaccttatcttattatgaaataaactttggataaatggacatggttttgttcatggatag
Basic information
species | Glycine max |
transcript | GLYMA13G17950.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G17950.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 10
AATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCAGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTTGGCGAGATCTATTTGACATTgtaagttcatgtaaattatttcttccatatttttattcttgaagaaaattaatgagacattctcgacattgga--ggaataaaatacactatctccacgtcattatttttccctaaattaacaaccttatcttattatgaaataaactttggataaatggacatggttttgttcatggatag
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TATCACAAACTCGGATTATCACTACACAGACAAAATGATGAAGCATTCATTTAACAAATTCCTTCCCAATGACATGGACTGGCGAGATCTTTTTGACATGgtgagcaaacgtaaat--ttgtttctgcattttgattgt------aaatc--tgttgtttttcagagagtagtttgcattagactttactgtttttgaattcatgtttccacatag------------------------------------------------------------------
upper sequence: GLYMA13G17950.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 10
AATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCAGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTTGGCGAGATCTATTTGACATTgtaagttcatgtaaatt-atttcttccatatttttattcttgaagaaaattaatgagacattctcgacattggaggaataaaatacactatctccacgtcattatttttccctaaattaacaaccttatcttattatgaaataaactttggataaatggacatggttttgttcatggatag
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TATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCTGGCGAGATCTATTTGACATGgtgactagacctcaactcatcctttttactgtattccacactgtttaattgattagcattcgtttgccccttcatccaagtgactcaa-gtccctgtagaa--------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15203420|gb|BI426188.1|BI426188EST: GGTTGGCGAGATCTATTTGACATT GTAATAGTCTCAGCAAGAAAACCAGAGTTCTTCCAAACGTCACATCCCATG
genomic: GGTTGGCGAGATCTATTTGACATTgtaagttcat ... tcatggatagGTAATAGTCTCAGCAAGAAAACCAGAGTTCTTCCAAACGTCACATCCCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCAGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTTGGCGAGATCTATTTGACATTgtaagttcatgtaaattatttcttccatatttttattcttgaagaaaattaatgagacattctcgacattggaggaataaaatacactatctccacgtcattatttttccctaaattaacaaccttatcttattatgaaataaactttggataaatggacatggttttgttcatggatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC