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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTAAAGGAGCAACACAATTGGGTTTGGTGCAACCAGATCCCTTGTATCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAGgtataataatatcaaagctctgagatctacttttataattgttcaagtgggcacagaggtagaattgcaacacacgcacacgcaatacatcttttaattt...

Basic information

species Glycine max
transcript GLYMA11G09390.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09390.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0044g01880.t01 (Vitis vinifera), 5'ss of exon 11
GTTATTAAAGGAGCAACACAATTGGGTTTGGTGCAACCAGATCCCTTGTATCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAGgtataataatatcaaagctctgagatctacttttataattgttcaagtgggcacagaggtagaattg-caacacacgcacacgcaatacatcttttaattt
 || ||||||| |||   ||| | ||| ||||| | ||||||||||||||||||||||| |||||  | |||||||||||||| || || |||   ||||||||   ||||        |||| |  || || ||| ||  ||   |||   | |||   || |||    | |  |      | |||    |         
ATTGTTAAAGGCGCAGTCCAACTTGGTCTGGTGAACCCAGATCCCTTGTATCAGTTTGTCCTTCTATTACAATATGCACTTCCGCCAGCCATGAACATAGgtatggaaataca-----cctgaaacataattctattataatttgggtgttgatagaaaaaggattaattagaggcagttgtgtaatgtggcag-------

upper sequence: GLYMA11G09390.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0044g01870.t01 (Vitis vinifera), 5'ss of exon 9
GTTATTAAAGGAGCAACACAATTGGGTTTGGTGCAACCAGATCCCTTGTATCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAGgtataataatatcaaagctctgagatctacttttataattgttcaagtgggcacagaggtagaattgcaacacacgc-acacgcaatacatcttttaattt----
 || ||||||| |||   | ||| ||| ||||||| ||||||||||||| ||||||||| ||||| || ||||||||| ||||||| |||||     |||||||   ||| |          |||| |  | || | |  |||  | | |      | ||    |||    |  |   |   |   |   || || ||  |    
ATTGTTAAAGGTGCACTTCGATTTGGTCTGGTGCACCCAGATCCCTTGTTTCAGTTTGTTCTTCTACTGCAATATGCAGTTCCACCAGCAATTAACTTAGgtatggaaatttagtcaactgtagatatgatgttgtta--gtttgatttgattagtatgtc---ttgtcttatgctttatttgattttggtccttcaacataagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4295191|gb|AI442298.1|AI442298
EST:     TCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAG                         GCACCATCGCGCAGTTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCA
genomic: TCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAGgtataataat ... cctctgtcagGCACCATCGCGCAGTTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCA
EST: gi|51341651|gb|CO982968.1|CO982968
EST:     TCAGTTTGTGGTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAG                         GCACCATCGCGCAGTTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCA
genomic: TCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAGgtataataat ... cctctgtcagGCACCATCGCGCAGTTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCA
EST: gi|192315779|gb|FK008489.1|FK008489
EST:     TCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAG                         GCACCATCGCGCAGTTGTTTGGAGCTGGTGAAG-TGAATGTTCTGTTATCA
genomic: TCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAGgtataataat ... cctctgtcagGCACCATCGCGCAGTTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCA
EST: gi|192315780|gb|FK008490.1|FK008490
EST:     TCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAG                         GCACCATCGCGCAGTTGTTTGGAGCTGGTGAAAGTGAATGTTCTGTTATCA
genomic: TCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAGgtataataat ... cctctgtcagGCACCATCGCGCAGTTGTTTGGAGCTGGTGAAGGTGAATGTTCTGTTATCA