1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGAGTCATATATGTAATTCCTTATTTCAATGAAAACTCTTCTGTGCAGAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGgtatgcattctggttgttatatatttcttttatctgtattaatctgtgttgtgatgaaaattaagcatatcatttttgctatttctctccttcctttgag...
species | Glycine max |
transcript | GLYMA11G09370.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG GTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTEST: gi|9820048|gb|BE555561.1|BE555561
genomic: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGgtatgcattc ... ctaaaaccagGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
EST: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG GTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTEST: gi|208154105|gb|GD954402.1|GD954402
genomic: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGgtatgcattc ... ctaaaaccagGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
EST: AAGATTG-TTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG GTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTEST: gi|4288246|gb|AI441305.1|AI441305
genomic: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGgtatgcattc ... ctaaaaccagGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
EST: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG GTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
genomic: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGgtatgcattc ... ctaaaaccagGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAGTCATATATGTAATTCCTTATTTCAATGAAAACTCTTCTGTGCAGAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGgtatgcattctggttgttatatatttcttttatctgtattaatctgtgttgtgatgaaaattaagcatatcatttttgctatttctctccttcctttgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA