Sequence
atgc intronic sequence ATGC exonic sequenceGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCACTTAACACTATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGgtaggttgctaattatatgacaccgattgacgaattgctttctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatag
Basic information
species | Glycine max |
transcript | GLYMA10G02040.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G50950.2 (Arabidopsis thaliana), 5'ss of exon 10
GCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCACTTAACACTATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGgtaggttg-ctaat--tatatgacaccgattgacgaattgctt--tctaatgttcaataaaaaattatttatattcatt------ggttttcttttatactatcctattatag-------------------------------
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GCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCCACATCATTGATGAAGATTGCCAATGATATACGTTTTCTTGGAAGgtacgttatctaatattttttaatctttcttcaagatgtacatgttcttatgataatttaacatgtctttatatatactttatatagtggtccaagatgtattcttatgatattttaacatgtctttatatatactttatatag
upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 11
GCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCACTTAACACTATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGgtaggt-tgctaattatatgacaccgattgacgaattgctttctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatag
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GCTGCACATGATGCATTTGTTGAAACTAGTGGTTCAGTTAACACTGTTGCTACTTCCCTGATGAAGATTGCTAATGATATACGCTTATTAGGAAGgtatgtatgctagttggatagc-----cttacag-----tttctatcgttttgcttta---tttttgtggtcatcactctgctttt-ccttgctcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207780421|gb|GD750774.1|GD750774EST: ATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAG TAGGTCCACGCTGCGGTCTTGGTGAACTC
genomic: ATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGgtaggttgct ... cctattatagT-GGTCCACGCTGCGGTCTTGGTGAACTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCACTTAACACTATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGgtaggttgctaattatatgacaccgattgacgaattgctttctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatag
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