Sequence
atgc intronic sequence ATGC exonic sequenceTATTAGGTCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTTCATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGGgtatggattttgctgatatagtttcattattatataattaaatgaatgtgatcctttctggcaaataattccgaatattttcaaatttcttattaaggaatagaaatgtaaaattcatactttggtgatgctcaattttcag
Basic information
species | Glycine max |
transcript | GLYMA09G04910.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G04910.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G017089_T02 (Zea mays), 5'ss of exon 9
TATTAGGTCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTTCATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGGgtatggattttgctgatatagtttcattattatataattaaatgaatgtgatcctttctggcaaataattccga-atattttcaaatttcttattaaggaatagaaatgtaaaattcatactttggtgatgctcaattttcag
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TATTAGGTCCTACCATGGGCATCTGAGTGGTGTTTACTGCCTAGCTCTCCATCCAACAATTGATATCTTACTGACTGGTGGCCGGGATTCAGTTTGCAGGgtatgatctctcttgcagttgcacc-ttctgaaaaatctcatcgtattcaatgatcacttggttttacttgggttatatgtacag----------------------------------------------------------
upper sequence: GLYMA09G04910.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S402_49V6.1 (Physcomitrella patens), 5'ss of exon 9
TATTAGGTCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTTCATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGGgtatggattttgctgatatagtttcattattatataattaaatgaatgtgatcctttctggcaaataattccgaatattttcaaatttcttattaaggaatagaaatgtaaaattcatactttggtgatgctcaattttcag
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TATTCGGTCATATCATGGTCATTTGAGTGGAGTTTATTGCTTAGCTCTTCATCCTACACTTGATATTCTCATGACTGGGGGTCGAGATTCAGTGTGCCGAgtaagacattcggt--tcttctttcttcact------tcagatggttcattttcaattgatcaaactattt---gtttttttcgcgttacaatcagacgtttttagcacctaacgctcttctctgcag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254313963|gb|GR831592.1|GR831592EST: ATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGG GTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGAT
genomic: ATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGGgtatggattt ... caattttcagGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGTCATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTAGGTCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTTCATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGGgtatggattttgctgatatagtttcattattatataattaaatgaatgtgatcctttctggcaaataattccgaatattttcaaatttcttattaaggaatagaaatgtaaaattcatactttggtgatgctcaattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA