Sequence
atgc intronic sequence ATGC exonic sequenceGTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGATGCCAACTTGGTAAGgtattcctttttttgggttagcaacaccctacctatgcatatatttttcagatttcctttaatgcattattttatgtttttcatagctgtcatttgaagaagagtggtaaggtgctttttgtcagttatatttgatgatatcatatgaatctgttttgttgcag
Basic information
species | Glycine max |
transcript | GLYMA08G33560.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g23890.2 (Oryza sativa), 5'ss of exon 10
GTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGATGCCAACTTGGTAAGgtattcctttttttgggttagcaacaccctacctatgcatatatttttc---agatttcctttaatgcattattttatgtttttcatagctgtcatttgaagaagagtggtaaggtgctttttgtcagttatatttgatgatatcatatgaatctgttttgttgcag
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GTCAAAGCTACAGCAGAGAATGTGGATGATGCAGTCAGGGAGCTTCCTGATGCCAACTTGgtaaggtacatctgctttttgtt--gtttcactttattagtagttagttcttgatggaagttgtcagcaatgtgaaaatgtagaaccaactttgcgcccaaa----------------------------------------------------------------------
upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G58140.4 (Arabidopsis thaliana), 5'ss of exon 11
GTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGATGCCAACTTGGTAAGgtattcctttttttgggttagcaacaccc-tacctatgcatatatttttcagatttcctttaatgcattattttatgtttttcatagctgtcatttgaagaagagtggtaaggtgctttttgtcagttatatttgatgatatcatatgaatctgttttgttgcag
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GTGAAAGCTACGGCAACAAATGTAGATGAAGCTGTCAGAGAGCTTCCAGATGCTAATACGgtaaggtgtactagttcattattacttaacaaagatggaaaagtataaatgcaatcgaattgc---aatgtattttag--------------------------------------------------------------------------------------------
upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 10
GTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGATGCCAACTTGGTAAGgtattcctttttttgggttagcaacaccctacctatgcatatatttttcagatttcctttaatgcattattttatgtttttc-atagctgtcatttgaagaagagtggtaaggtgctttttgtcagttatatttgatgatatcatatgaatctgttttgttgcag
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GTCAAAGCTACTGCAGAAAATGTTGATGAAGCTGTTCGAGAACTTCCTGATGCCAACTTGgtaaggtactctttttttttgctttgtg----tttgagtttggattgattgctaggaggtgtctttgaaaatcatgacctctccctctgtgactttgtactgtt------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31306491|gb|CD391694.1|CD391694EST: GAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGATGCCAACTTG--A-G A--CCAGAAGATTTGTGGGCAATTCATTCCCAACCTGTCTTTCCACGACCT
genomic: GAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGATGCCAACTTGGTAAGgtattccttt ... tttgttgcagAGACCAGAAGATTTGTGGGCAATTCATTCCCAACCTGTCTTTCCACGACCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGATGCCAACTTGGTAAGgtattcctttttttgggttagcaacaccctacctatgcatatatttttcagatttcctttaatgcattattttatgtttttcatagctgtcatttgaagaagagtggtaaggtgctttttgtcagttatatttgatgatatcatatgaatctgttttgttgcag
- - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - CAGATG