Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgatgaagtttcttttttacttattggtctggttataaaagttattcgcgtgtcataagagcagagca...

Basic information

species Glycine max
transcript GLYMA08G13370.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaa-----tcacagcactactatgacttgtttctgtgatgaagtt--tcttttttacttattggtctggttataaaagttattcgcgtgtcataagagcagagca
||||||||| |||||  | ||  ||||||| || ||||| ||||||||||| || |||||||| ||||| ||||| ||||| || |||||||| |||||||| ||     | ||   | ||       ||||||  |  |   |  |  |   | |    || ||||   |||  |    ||||  |  ||    |  |        
CCTTACACCTTCTGTTATCTCATTGATGGGTGGGCTGCTTCCCTTTGGCAGTATCTTCATTGAGATGTACTTTGTGTTCACGTCATTCTGGAACTACAAGgtaaacagtttaacttaagtatccaagtttgttttggaaacagaagtagtgcctatggtgtactggt---gttcaacctcttatatggctgcttcataaatta----

upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g34690.1 (Oryza sativa), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgatgaagtttcttttttacttattggtctggttataaaagttattcgcgtgtcataagagcagagca----
||| || || |||||  || | || |||||||||||||| || ||||| ||||| |||||||| ||||| ||||| ||||| || || ||||| |||||||| || ||  |||  ||||       |||        | | ||| ||  ||   |    |  |  | | | | |||| |     || | |      |       
CCTCACGCCTTCTGTCATTGCCCTCATGGGAGGACTGCTTCCTTTTGGTAGCATCTTCATTGAGATGTACTTTGTCTTCACATCATTTTGGAACTACAAGgtaaaaca-ggcaacacta------attttcccatacaggcttcattactaaggagccctgagagt-tgagacttatgcatccttcctgatcatctattgacag

upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os11g07910.1 (Oryza sativa), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaat----cacagcact--actatgacttgtttctgtgatgaagtttcttttttacttattggtctggttataaaagttattcgcgtgtcataagagcagagca---------------------------------------------------------
 ||||||||||||||  | ||  ||||||| ||||| || ||||| |||||||| ||||| || ||||| ||||| || ||||| |||||||| |||||||| ||     || | || |  ||  | |  || ||||  | |     ||||     | |||||   || |  | | | |  |||  |     ||  |  |  | |                                                          
TCTTACACCCTCTGTTATCTCATTGATGGGTGGACTACTCCCCTTCGGCAGCATCTTCATCGAGATGTACTTTGTGTTTACTTCATTCTGGAACTACAAGgtaaagaaaacatatcagtgaacactaatgtgcttctcagttctcacttctcaacaaattattttgctaga-acagatggcatttacagtagatgtgtaccaacctaaaactctttttaatttgatggatagatagtaaccctatttctttggtatttggcag

upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G087212_T01 (Zea mays), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgatgaagtttc--ttttttacttattggtctggttataaaagttattcgcgtgtcataagagcagagca-------------------------------------------------
||||||||| |||||  |||| |||||||| ||||| || ||||| |||||||| |||||||| ||||| || |||||||||||||||||||| |||||||| ||  | |  |  |   ||  |  ||   ||  | ||| | |  |      | ||| |       |  |  | ||  | |   |||| |  |||| ||                                                   
CCTTACACCTTCTGTTATTTCACTGATGGGTGGACTTCTCCCCTTCGGCAGCATCTTCATTGAGATGTACTTCGTATTCACTTCCTTCTGGAACTACAAGgtaaa--aaaaaaacatagtgg-tgattgaagtactaaagatccaatcaccagcatatagaatgatctgcactactttcttg---gtcacagtagcaaagtttctttcttttagtttcaaggaatattgactccacttggtgccttggcag

upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G026231_T01 (Zea mays), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaat---cacagcactactatgacttgtttctgtgatgaagtttcttttttacttattg--gtctggttataaaagttattcgcgtgtcataagagcagagca
||||||||| |||||  | ||  ||||||| || ||||| ||||||||||| || |||||||| ||||| || || ||||| || |||||||| || ||||| ||    || |    |  ||  | || | |      |||  |  ||| | |    | ||   ||| ||  |  ||| | | |  |  |  | |          
CCTTACACCTTCTGTCATCTCATTGATGGGTGGCCTGCTTCCCTTTGGCAGTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagcaaatgctttttaacatttttgtaccccgtgacatcgcttctcttaccactgtcatcttgtactgtaaggtgtgcatggttggttactttt-----

upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgatgaagtttc----ttttttacttattggtctggttataaaagttattcgcgtgtcataagagcagagca
| | || || || || || || |||||||| ||  ||||||||||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||| ||| | ||     ||             || ||| | || |    | || | |  ||||| |       | |  ||  |     || | |    |  | | 
CTTGACTCCATCAGTCGTCTCCCTGATGGGGGGTTTGCTACCCTTTGGAAGCATCTTCATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGgtaaat-atagtttctcttaataagaacaaagttatggaattgcaaattcttattccaattggccaaaccggagagatt--tgattagtgagagactctcaac-

upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactact---atgacttgtttct--gtgatgaagtttctttt--ttacttattggtctggttataaaagttattcgcgtgtcataagagcagagca
 || ||||| ||||| || ||||| |||||||||||||| || ||||| || || |||||||| ||||||||||| ||||| |||||||||||||| ||||| |||   | || | ||   || | ||   |    |||||||   || ||||  ||   |||||    | || |      |  |   |   | | |          
TCTCACACCATCTGTAGTCTCTCTCATGGGAGGACTGCTTCCTTTTGGGAGTATTTTCATTGAGATGTATTTTGTCTTCACATCCTTCTGGAATTATAAGgtaaatatgaccatttcttcaataatttaaatgcaagtgatgagaattgttttccttgagtattgtcaagattttccccagtgctgctgcacctttattt-------

upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgatgaagtttcttttttacttattggtctggttataaa-agttattcgcgtgtca-taagagcagagca--------
 || ||||| ||||| || ||  |||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||| |||         |  ||||||  ||  | ||| |  | ||  |    |  || |||| ||   |     | || ||    ||| | | | | ||  |||        
TCTCACACCATCTGTTGTCTCAATGATGGGAGGTCTGCTACCCTTTGGCAGCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGgtaaat---------ataatgactctttggtttga-gtggcttgctaaaaagatactggtgtgagcaaggccatttttttatttgtaaatgaaaacattgcagtgtcttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295891|gb|FG992657.1|FG992657
EST:     GCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAG                         GTGTACTATGTGTATGGCTTTATGCTGCTAGTCTTTGTGATTCTTATCATC
genomic: GCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcaca ... tggcatacagGTGTACTATGTGTATGGCTTTATGCTGCTAGTCTTTGTGATTCTTATCATC