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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCTTTAATGCATTTGATAAAGCTGCCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgtatttcttcatcgcggtacttttttttgccatacaactgttgctcattgttgtggtgtttaagttagcatttttatattttgggttatgca...

Basic information

species Glycine max
transcript GLYMA08G09640.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os10g39220.1 (Oryza sativa), 5'ss of exon 10
ATGTGCTTTAATGCATTTGATAAAGCTGCCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgtatttcttcatcgcggtacttttttttgccatacaactgttgctcattgttgtggtgtttaagttagcatttttatattttgggttatg-ca---
|||||  | ||  ||||||||||||| || |||||||||||  || ||||||| |||||||||||  | |||||| ||||  || |  |||  || ||  |    ||  ||  |    |     |  |    |||||     |||| |   |   | || |  | | ||  ||| | ||   
ATGTGTCTCAACACATTTGATAAAGCAGCTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttgattcatttatttc----ctacttggtatgcttttgttcgtttatattgtcaaaatgttaagcattcaacttatgcagtatgacttacgacaact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990122|gb|BI315795.1|BI315795
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|192314058|gb|FK008798.1|FK008798
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|254331036|gb|GR842301.1|GR842301
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|58024096|gb|CX710837.1|CX710837
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|31460258|gb|CD402226.1|CD402226
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|58023915|gb|CX710656.1|CX710656
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|17022961|gb|BM093995.1|BM093995
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|7925533|gb|AW831559.1|AW831559
EST:     GACCTTGATGTC-TGTACCCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: GACCTTGATGTCTTGTA-CCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|193416447|gb|FK384953.1|FK384953
EST:     TGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: TGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|57574634|gb|CX547609.1|CX547609
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|15661719|gb|BI699090.1|BI699090
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGGCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT