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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgcttgattctttacttaaatgaagcaattataaatgtgtttctaag

Basic information

species Glycine max
transcript GLYMA06G17250.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17250.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G61960.2 (Arabidopsis thaliana), 5'ss of exon 11
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgcttgattctttacttaaatgaagc----aattataaatgtgtttctaag---------------------------------
||| ||||| |||||||||||   ||| || || ||||| |||  ||||||||||||||| || |||||||||||||| ||||||||||| |    |     |||  |  |      |    ||| | |   ||  |    |  | |   | | || | |                                   
GTACACTTCGAAGATGCTTCTATCTGCTATTGACGAGCATTGTAAAGGAACTTATGATTTCCTTTATTTGCCAATTGACTTCAAGgcaagcaggcgtcctaccttttttatataagaaagtcttattaagcagacacgtagaggttttggtattttgcaataacgatctaatctaatcttaccctgtcatttcag

upper sequence: GLYMA06G17250.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G07290.1 (Arabidopsis thaliana), 5'ss of exon 11
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgcttgattc--tttacttaaatgaagcaattataaatgtgtttctaag--------------------------------
||||||||| |||||||| || | ||| || |||||| | |||  |||||| ||||||||||| |||||||||||||| ||||||| | | |    | |   ||   |  |    | ||    | || |  |       |  |     | | ||||||                                  
GTATACTTCTAAGATGCTCCTAGCTGCTATTGATGAGTACTGTAAAGGAACATATGATTTTCTTTATTTGCCAATTGACTTCAAGgtatgcaggcctcttacctgttttttcatctaatggagtctaatgcagccttatagcttagggtat-tttctacatcgatataaatgaaccttccttctatttgcag

upper sequence: GLYMA06G17250.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgccaattgatttcaaggcaagta---tttatttggacttgctagttgcttgattctttacttaaatgaagcaattataaatgtgtttctaag------------------------
|||||||||||| |||||||||| ||| || ||||| ||   ||||||||||||||||||| | |||||||||||||| ||||| | |||||    ||   |||| |   |  |   | |       | | | ||    ||  |  | || | |   |                           
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatt-tctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105757|gb|BI893497.1|BI893497
EST:     ATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCT                         GTA-TT-TGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTC
genomic: ATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgcca ... tgtttctaagGCAATTCTACAAATGG-TTGCA-GAACAAATGTAATGTTGGCTATGCATTC