Sequence
atgc intronic sequence ATGC exonic sequenceTTTGATGATGTGACTATAGGTGTTGTACTTATTTCAGGTTGCTTCTGCACTTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATATGGCAAGgtttatgaatattttccatcactgctgtatggtttaaacaatgtagactttgatctgcattctttgttctgaaaaccccatgtccatctgaaagcgtttt...
Basic information
species | Glycine max |
transcript | GLYMA05G29820.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G29820.2 (Glycine max), 5'ss of exon 10
lower sequence: AT5G46390.1 (Arabidopsis thaliana), 5'ss of exon 9
TTTGATGATGTGACTATAGGTGTTGTACTTATTTCAGGTTGCTTCTGCACTTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATATGGCAAGgtttatgaatattttccatcactgctgtatggtttaaacaatgta--gactttgatctgcattctttgttctgaaaaccccatgtccatc--tgaaagcgtttt--
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-------------------------------------GTGGCCTCTGCACTTCATGATAACTGTAAAGCAGTTCTTGTTGGCGAAAGAACTTATGGAAAGgtt-------attccaaaggcttacta-gtttcataaccaatctatcgattttgaattg---tttttgatc----atcttcatgtcatttgattaatgggtttcag
upper sequence: GLYMA05G29820.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g02730.t01 (Vitis vinifera), 5'ss of exon 10
TTTGATGATGTGACTATAGGTGTTGTACTTATTTCAGGTTGCTTCTGCACTTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATATGGCAAGgtttatgaatattttc-catcactgctgtatggtttaaacaatgtagactttgatctgcattctttgttctgaaaaccccatgtccatctgaaagcgtttt----
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-------------------------------------GTTTCCGCTGCCCTTCATGATAACTGTAGAGCTGTTCTTGTGGGGCAAAGGACTTTTGGCAAGgtta--gaatatctgctcatcccagctaacaattccaaaccagttctgtagcgattctgaatttttaat----gaatttgatactaagctgaataccattgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51337327|gb|CO981193.1|CO981193EST: TTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATATGGCAAG GGTCTAATCCAATCTGTATTTGAGCTTGATGATGGATCTGGTGTGGTTATC
genomic: TTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATATGGCAAGgtttatgaat ... gttctatcagGGTCTAATCCAATCTGTATTTGAGCTTGATGATGGATCTGGTGTGGTTATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGATGATGTGACTATAGGTGTTGTACTTATTTCAGGTTGCTTCTGCACTTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATATGGCAAGgtttatgaatattttccatcactgctgtatggtttaaacaatgtagactttgatctgcattctttgttctgaaaaccccatgtccatctgaaagcgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT