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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaag

Basic information

species Glycine max
transcript GLYMA04G37810.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37810.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G61960.2 (Arabidopsis thaliana), 5'ss of exon 11
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgattgattctttacttaaatgaa--gtaatcataaatatgtttctaag-----------------------------------
||| ||||| |||||||||||   ||| || || ||||| |||  ||||||||||||||| || |||||||||||||| ||||||||||| |    |     |||  |  |  |   |    ||| | |   ||   |||    |     | |||   |                                    
GTACACTTCGAAGATGCTTCTATCTGCTATTGACGAGCATTGTAAAGGAACTTATGATTTCCTTTATTTGCCAATTGACTTCAAGgcaagcaggcgtcctaccttttttatataagaaagtcttattaagcagacacgtagaggttttggtattttgcaataacgatctaatctaatcttaccctgtcatttcag

upper sequence: GLYMA04G37810.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G07290.1 (Arabidopsis thaliana), 5'ss of exon 11
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgattgattc---tttacttaaatgaagtaatcataaatatgtttctaag--------------------------------
||||||||| |||||||| || | ||| || |||||| | |||  |||||| ||||||||||| |||||||||||||| ||||||| | | |    | |  || || |  || ||  | |    | || |  |      ||        ||| ||||||                                  
GTATACTTCTAAGATGCTCCTAGCTGCTATTGATGAGTACTGTAAAGGAACATATGATTTTCTTTATTTGCCAATTGACTTCAAGgtatgcaggcctctt-acctgttttttcatctaatggagtctaatgcagccttatagcttagggtat-tttctacatcgatataaatgaaccttccttctatttgcag

upper sequence: GLYMA04G37810.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgccaattgatttcaaggcaagta---tttatttggacttg-ctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaag----------------------
|||||||||||| |||||||||| ||| || ||||| ||   ||||||||||||||||||| | |||||||||||||| ||||| | |||||    ||   |||| |    |  ||    ||       |  | ||||  ||  || | || || |||                          
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag