1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCAgtaagtgtggttggctttaccctgctttctgtattcaaactaatttagtattgcattatgtatatcagcctgtatttctcctgaatttgattaaccaatgaatgttgctctttagaaaaactagcacagaaattttagactagtttatttttttatgcag
species | Glycine max |
transcript | GLYMA04G06760.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCA CTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCCAACGCTEST: gi|26058288|gb|CA801202.1|CA801202
genomic: ATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCAgtaagtgtgg ... ttttatgcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCCAACGCT
EST: ATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCA CTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCCAACGCTEST: gi|14126759|gb|BG791197.1|BG791197
genomic: ATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCAgtaagtgtgg ... ttttatgcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCCAACGCT
EST: ATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCA CTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCCAACGCTEST: gi|9563873|gb|BE473382.1|BE473382
genomic: ATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCAgtaagtgtgg ... ttttatgcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCCAACGCT
EST: ATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCA CTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCCAACGCT
genomic: ATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCAgtaagtgtgg ... ttttatgcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCCAACGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCAgtaagtgtggttggctttaccctgctttctgtattcaaactaatttagtattgcattatgtatatcagcctgtatttctcctgaatttgattaaccaatgaatgttgctctttagaaaaactagcacagaaattttagactagtttatttttttatgcag
- - - - - - - - - - - - - - - - - - - - - - - GCTGTT