1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATTTACAACAGCTCCATCCCTTGCCATTCCCAAAGCTATTGCCAAGGCAGGGTTGGAGACTTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggatttcatgtcatttttaattgtagtcatttttcaactcatgatgccgtgaattttaattcttcttattgctgtctgtag
species | Glycine max |
transcript | GLYMA02G47860.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGAAATTAATGAAGCCTTTGCG GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCGEST: gi|193383945|gb|FK351350.1|FK351350
genomic: ATGAAATTAATGAAGCCTTTGCGgtaggatttc ... ctgtctgtagGTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: GGTTGGAGACTTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCGEST: gi|193329280|gb|FK296518.1|FK296518
genomic: GGTTGGAGACTTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggatttc ... ctgtctgtagGTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: CAAA-TGATTTTTATGAAATTAATGAAGCC-TTGCG GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCGEST: gi|209700567|gb|BW670311.1|BW670311
genomic: CAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggatttc ... ctgtctgtagGTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: TTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: TTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggatttc ... ctgtctgtagGTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTACAACAGCTCCATCCCTTGCCATTCCCAAAGCTATTGCCAAGGCAGGGTTGGAGACTTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggatttcatgtcatttttaattgtagtcatttttcaactcatgatgccgtgaattttaattcttcttattgctgtctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC