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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagcctttattttctgcaaaacaaacatgtttttcacaaaagattgtgcttctgtgttaatatttactggtattctgtttcatctattgtagattgtg...

Basic information

species Glycine max
transcript GLYMA02G00750.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G00750.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0130g00310.t01 (Vitis vinifera), 5'ss of exon 10
AATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagc-------ctttattttctgcaaaacaaacatgtttttcacaaaagattgtgcttctgtgttaatatttactggtattctgtttcatctattgtagattgtg
||||||||| || |||||||| || ||||| |||||||| ||  |  ||||  | |||||||||||||||||||||||| ||||||||     |||||||||           ||||  ||||||  |       || || |||    |  |  |   ||| |    |||  | |||||  || |   |   ||   |||       
AATGGAAGTCGTTAACAGGCTTACTACAGCGGTTGAACTTCCCACCGAATTTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttcttcactttgctttctgatagcattttatattgttccttgacaaacggatttcagcaa-aattctgactggatttatcgctgggcttgagtaa------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328005|gb|GR834970.1|GR834970
EST:     TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAG                         GATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAA
genomic: TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagccttt ... tttttctcagGATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAA
EST: gi|193718862|gb|FK655240.1|FK655240
EST:     TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCNTCAAG                         GATAAATACATGCAGGACAGGCTTGTGAGACTTGTCTGTTGTTTTTCTGCA
genomic: TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagccttt ... tttttctcagGATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGT-GTTTTTCTGCA
EST: gi|13562521|gb|BG550741.1|BG550741
EST:     TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAG                         GATAAATACATGCAGAACAGGCTTGTGAGA
genomic: TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagccttt ... tttttctcagGATAAATACATGCAGAACAGGCTTGTGAGA
EST: gi|254328398|gb|GR835363.1|GR835363
EST:     TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAG                         GATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAA
genomic: TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagccttt ... tttttctcagGATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAA
EST: gi|254328006|gb|GR834971.1|GR834971
EST:     TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAG                         GATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGNNNNNNNGCAA
genomic: TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagccttt ... tttttctcagGATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAA
EST: gi|214007170|gb|DB990497.1|DB990497
EST:     TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAG                         GATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAA
genomic: TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagccttt ... tttttctcagGATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagcctttattttctgcaaaacaaacatgtttttcacaaaagattgtgcttctgtgttaatatttactggtattctgtttcatctattgtagattgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaaa