1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGTAGATTTCTTCCAGTGCTTAACAATGAAATACCAGATAAGAGAAATTCTACTTACAAGGAAAGATTTAGTAGCTTGCAGAATTTGGTACTTATCATGgtaagtcctctaaatgtatttttgtgatattatgaatagaatattgctaattgatttcatgaggaaagcttatatatttgtaatcttattttatacattaacag
species | Glycine max |
transcript | GLYMA01G41570.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGAATTTGGTACTTATCATG TTTGAGCACGACACTGTTTTAATACCAAAGGAAACTTCCTGGTTTGGATATEST: gi|5761044|gb|AI966407.1|AI966407
genomic: AGAATTTGGTACTTATCATGgtaagtcctc ... acattaacagTTTGAGCACGACACTGTTTTAATACCAAAGGAAACTTCCTGGTTTGGATAT
EST: CTACTTACAAGGAAAGATTTAGTAGCTTGCAGAATTTGGTACTTATCATG TTTGAGCACGACACTGTTTTAATACCAAAGGAAACTTCCTGGTTTGGATATEST: gi|209715753|gb|BW677247.1|BW677247
genomic: CTACTTACAAGGAAAGATTTAGTAGCTTGCAGAATTTGGTACTTATCATGgtaagtcctc ... acattaacagTTTGAGCACGACACTGTTTTAATACCAAAGGAAACTTCCTGGTTTGGATAT
EST: GGAAAGATTTAGTAGCTTGCAGAATTTGGTACTTATCATG TTTGAGCACGACACTGTTTTAATACCAAAGGAAACTTCCTGGTTTGGATATEST: gi|9901990|gb|BE610958.1|BE610958
genomic: GGAAAGATTTAGTAGCTTGCAGAATTTGGTACTTATCATGgtaagtcctc ... acattaacagTTTGAGCACGACACTGTTTTAATACCAAAGGAAACTTCCTGGTTTGGATAT
EST: CTACTTACAAGGAAAGATTTAGTAGCTTGCAGAATTTGGTACTTATCATG TTTGAGCACGACACTGTTTTAATACCAAAGGAAACTTCCTGGTTTGGATAT
genomic: CTACTTACAAGGAAAGATTTAGTAGCTTGCAGAATTTGGTACTTATCATGgtaagtcctc ... acattaacagTTTGAGCACGACACTGTTTTAATACCAAAGGAAACTTCCTGGTTTGGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTAGATTTCTTCCAGTGCTTAACAATGAAATACCAGATAAGAGAAATTCTACTTACAAGGAAAGATTTAGTAGCTTGCAGAATTTGGTACTTATCATGgtaagtcctctaaatgtatttttgtgatattatgaatagaatattgctaattgatttcatgaggaaagcttatatatttgtaatcttattttatacattaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA