Sequence
atgc intronic sequence ATGC exonic sequenceTATTCATTCTGCTTCAGATTTTCGGCCACGGACAACTCTCTGTGGTGATTACTTTTATAATTATTTTACTCGTGGTCTGGACATCTTATTTGATGGACAGgtttgtaacttacatcatgcttttgtttctatacatagtgacacaactgataatagaaactcctacatgtctgttttattttcag
Basic information
species | Glycine max |
transcript | GLYMA01G37380.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os06g49990.3 (Oryza sativa), 5'ss of exon 10
TATTCATTCTGCTTCAGATTTTCGGCCACGGACAACTCTCTGTGGTGATTACTTTTATAATTATTTTACTCGTGGTCTGGACATCTTATTTGATGGACAGgtttgtaa---cttacatca----tgcttttgtttctatacatagtgacacaactgataatagaaactcctac-atgtctgttttattttcag-------------
|| ||||| || ||||| || || ||||||||||| ||||| ||||| ||||| || || || |||||||| | || |||||||||||||| ||||| | || |||||| | || | ||| | | | || | | ||| | | | | || | || || |
AATACATTCAGCATCAGACCCCCGCCCTCGGACAACTCTTTGTGGGGATTATTTTTACAACTACTTCTCTCGTGGTATTGATATCTTATTTGATGGGCAGgtatttatattcttacactaaggatgtctgcagttcaaagggcatgtttttttcagagactcaaaatgcttgctaaccttgctctacatttattttctccttgcag
upper sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 10
TATTCATTCTGCTTCAGATTTTCGGCCACGGACAACTCTCTGTGGTGATTACTTTTATAATTATTTTACTCGTGGTCTGGACATCTTATTTGATGGACAGgtttgtaacttacatcatgcttttgtttctatacatagtgacacaactgataatagaaactcctacatgtctgttttattttcag
|||||||||||| |||||| ||| ||| |||||| ||||||||||||||||||| || ||||||||||||||| |||||||| | |||||||| |||| | |||| | | || | | | | ||| || || | ||||| | | ||||
TATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaactcatcaactagagttatatgt-tccattcgtacgttttctttattcacaactctaccttttctgcag---------
upper sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 10
TATTCATTCTGCTTCAGATTTTCGGCCACGGACAACTCTCTGTGGTGATTACTTTTATAATTATTTTACTCGTGGTCTGGACATCTTATTTGATGGACAGgt------ttgtaacttacatcatgcttt----tgtttctata-catagtg-acacaactgataata----gaaactcctacatgtctgtttt--attttcag
||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||| |||||||||| ||||| || || | ||| | | | ||| ||| || ||| | | | | || || || || | || ||| || |||| |||
AATTCACTCTGCCTCAGATCCTCGCCCACGGACAACTCTCTGTGGTGATTACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGGCAGgtactcctttttattgtgtgtcaaaatatatattacttcaataatattgtgcatatatatcatcgtacttgaaagttctcagattattgtattggatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15661878|gb|BI699249.1|BI699249EST: CTTTTATAATTATTTTACTCGTGGTCTGGACATCTTAATTTGATGGACAG ACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGT
genomic: CTTTTATAATTATTTTACTCGTGGTCTGGACATCTTA-TTTGATGGACAGgtttgtaact ... ttattttcagACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTCATTCTGCTTCAGATTTTCGGCCACGGACAACTCTCTGTGGTGATTACTTTTATAATTATTTTACTCGTGGTCTGGACATCTTATTTGATGGACAGgtttgtaacttacatcatgcttttgtttctatacatagtgacacaactgataatagaaactcctacatgtctgttttattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA