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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtagataccttcttctctttttcttcatcactcctctttcttcaggatcgtactagaaattcaagtttatacattctgtagtaggaggagtgaattccat...

Basic information

species Glycine max
transcript GLYMA20G20010.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G20010.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g09210.1 (Oryza sativa), 5'ss of exon 1
TCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtagataccttcttctctttttcttcatcactcctctttcttcaggatcgtactagaaattcaagtttatacattctgt-agtaggaggagtgaattccat-
|||||| |||||| ||||||||| | ||||||||||||||| | |||||||| ||| | ||||| ||||||||||| |||||||| |||||| ||||  ||||  | |    | | | |     |      |   ||    |  |  |     |     || |         |||| ||  ||| | |           |  
TCCCCACCAAGGGGCCCAGCGCCATCGCCATCTTCCTCACTACCTTCGGCGCCTTCGCCTGGGGGATGTACCAGGTTGGCCAGGGGAACAAGGTCCGCCGgtaagttcgccttgcgcatccatgtttatgttaaactgcaattcgttttactgtgtctgtttag--ccgcgaattccgttggtatgggacacccgccaaaaa

upper sequence: GLYMA20G20010.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G070716_T02 (Zea mays), 5'ss of exon 1
TCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtagataccttcttctctttttcttcatcactcctctttcttcaggatcgtactagaaattcaagtttatacattctgtagtaggaggagtgaattccat-
| |||| |  |||||||||||||  ||||||||||||||| || |||||||| ||| | |  ||||||||||||||||| ||||| |||||| | ||  ||||  | |   ||   |    || |       ||    | ||  |   || |    |  ||   |   |  ||   ||   ||    | ||  ||   || 
TTCCCACCTCGGGCCCCAGCGCCACTGCCATCTTCCTCACGGCCTTCGGCGCCTTCGCGTATGGCATGTACCAGGTCGGTCAGGGGAACAAGGTGCGCCGgtaagtgcgcgctcagccagctcattcagttgcccgcctattacgctgcgcatctcattttttggcagaggcagcttgctttaaattg-gtttatgttata

upper sequence: GLYMA20G20010.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G070716_T01 (Zea mays), 5'ss of exon 1
--------TCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtagataccttcttctctttttcttcatcactcctctttcttcaggatcgtactagaaattcaagtttatacattctgtagtaggaggagtgaattccat
        | |||| |  |||||||||||||  ||||||||||||||| || |||||||| ||| | |  ||||||||||||||||| ||||| |||||| | ||  ||||  | |   ||   |    || |       ||    | ||  |   || |    |  ||   |   |  ||   ||   ||    |  |         
GCGCCGGATTCCCACCTCGGGCCCCAGCGCCACTGCCATCTTCCTCACGGCCTTCGGCGCCTTCGCGTATGGCATGTACCAGGTCGGTCAGGGGAACAAGgtgcgccggtaagtgcgcgctcagccagctcattcagttgcccgcctattacgctgcgcatctcattttttggcagaggcagcttgctttaaattggttt--------

upper sequence: GLYMA20G20010.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G004172_T01 (Zea mays), 5'ss of exon 1
TCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtagataccttcttctctttttcttcatcactcctctttcttcaggatcgtactagaaattcaagtttatacattctgtagtaggaggagtgaattccat---------
|||||| |  ||| |||||||||   ||||||||||||||  | ||||| |||||| | |  ||||||||||||||||||||||| |||||| ||||  ||||  |     | ||||||||| ||  |||  |  ||| ||| |   | |   ||| |  |      ||||   |  | | ||||   | |    | | |         
TCCCCACCTCGGGGCCCAGCGCCACCGCCATCTTCCTCACCACCTTCGGTGCTTTCGCATATGGCATGTACCAGGTCGGCCAGGGGAACAAGGTCCGCCGgtaagtggg--catctctttttttt-gtcaggcagcttgcttgaaattggcggtagtatgt------tataagcttggaaataggttaactatgattcgtacgcaaatg

upper sequence: GLYMA20G20010.2 (Glycine max), 5'ss of exon 1
lower sequence: AT1G04630.1 (Arabidopsis thaliana), 5'ss of exon 1
TCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtagataccttcttctctttttcttcatcactcctctttcttcaggatcgtactagaaattcaagtttatacattctgtagtaggaggagtgaattccat-
|  |||| | ||| || || ||  | ||||| |||||  | | ||  || || ||  ||||||| |||||||||||||||||||| ||||| ||||| |||||   ||    |    |   || |   || | |  ||| | |   |   | | |||    |  | | | |  |  ||| || |   || |||   |||| 
TATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGgtaagaacgacttgtaatagctcgttcacatttcaatttttcctctaaaattcgagatcgccttggtaaaat-tagtgttgtggagtgattgatgaccata

upper sequence: GLYMA20G20010.2 (Glycine max), 5'ss of exon 1
lower sequence: AT2G33220.1 (Arabidopsis thaliana), 5'ss of exon 1
TCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtagataccttcttctctttttcttcatcactcctctttcttcaggatcgtactagaaattcaagt--ttatacattctgtagtaggaggagt--gaattccat
|| |||||| ||| || |||||| | || || ||||| || | || ||| |||||  |||||||||||||||| || || ||||||||||| ||||| |||||  ||  |  |    | |    |      |    |    |        |  |  || ||  |||  ||    |||   |  || ||  | |  | |||    
TCTCCAACACGGGACCTAGCGCCATGGCTATTTTCCTTACCGTTTCCGGTGCTTTTGCTTGGGGCATGTACCAAGTTGGTCAGGGCAACAAAATCCGCAGgtaattagataatgagatgtggaatttgagtttggttaggcttttctctattgtgaaattttgagtaatttgggattgaatcttaagacaatttgggatt----

upper sequence: GLYMA20G20010.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0005g04970.t01 (Vitis vinifera), 5'ss of exon 1
TCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtagataccttcttc--tctttttcttcatcactcctctttcttcaggatcgtactagaaattcaagtttatacattctgtagtaggaggagtgaattccat
| || | ||| || ||||| ||| | |||||||| ||  | ||  |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |   || |||   | | |||  |  |   | |    |||    | | |    ||||| | || |  |   | |   ||||  ||    |  |||    
TTCCGACCAAAGGTCCCAGTGCCATGGCCATCTTTCTAGCCGCCGTCGGTGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAAGGCAACAAGATCCGGAGgtaaaattctactttcatatctttgctgtttgtttcgtcatctgtttggttgc-tgagaaagtgaaatggaagaaattgatagtttgaatcttagattttg-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843157|gb|BF066470.1|BF066470
EST:     CTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAG                         AAGTAGCTGTTTAAGGAAGAACCGGATCACATATGTTTGTTTTCAGTTCCC
genomic: CTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtagatacct ... tgaaaaatagAAGTAGCTGTTTAAGGAAGAACCGGATCACATATGTTTGTTTTCAGTTCCC