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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAACAACATGTAGTTGGTGGAAGCCAAGGTTGGGATGAATCAACAGACTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGgtatgtttcttgcccataattttaaaggatttaatttaaatgcactaactataaaattgcattccattataaattaccattatgataagattcttgactt...

Basic information

species Glycine max
transcript GLYMA19G25570.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G25570.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0171g00100.t01 (Vitis vinifera), 5'ss of exon 1
GCAGAACAACATGTAGTTGGTGGAAGCCAAGGTTGGGATGAATCAACAGACTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGgtatgtttcttgcccataattttaaaggatttaatttaaatgcactaactataaaattgcattccattataaattaccattatgataagattcttgactt-------------------------------------------
|||  ||||||||| ||||| |||||||| ||||||||||||||| |||| |  |     ||||  || || ||||||||  ||||||||||||||||||||||||||||| ||  | | |  ||  |   || | || |   |   | ||  |   |||||      |  | |||||| |   |        ||| |||                                           
GCAACACAACATGTGGTTGGAGGAAGCCAGGGTTGGGATGAATCATCAGATTATAGCAAATGGGCATCTGGTCAAACATTCGAGGTTGGCGATCAACTTGgtatgtttcttcccttttagt--aattggcctagtatatacaaatgcaataagagcatgcatatagcca-gatttaccagttcaagccatggtttggcttgttagggctgatttttgatgtcattaatcatatttttggacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197785|gb|HO039324.1|HO039324
EST:     CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTG                         TTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
genomic: CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGgtatgtttct ... cttgtggcagTTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
EST: gi|192318861|gb|FK008353.1|FK008353
EST:     CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTG                         TTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
genomic: CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGgtatgtttct ... cttgtggcagTTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
EST: gi|31473638|gb|CD415666.1|CD415666
EST:     AACATTTAAGGTTGGCGATCAACTTG                         TTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
genomic: AACATTTAAGGTTGGCGATCAACTTGgtatgtttct ... cttgtggcagTTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
EST: gi|151404343|gb|EV274153.1|EV274153
EST:     CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTCG                         TTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
genomic: CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGgtatgtttct ... cttgtggcagTTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
EST: gi|58022151|gb|CX708892.1|CX708892
EST:     CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTG                         TTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
genomic: CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGgtatgtttct ... cttgtggcagTTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
EST: gi|192318862|gb|FK008354.1|FK008354
EST:     CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTG                         TTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
genomic: CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGgtatgtttct ... cttgtggcagTTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
EST: gi|151395501|gb|EV265378.1|EV265378
EST:     CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTG                         TTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
genomic: CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGgtatgtttct ... cttgtggcagTTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
EST: gi|192331802|gb|FK024906.1|FK024906
EST:     CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTG                         TTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG
genomic: CTTCAATTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGgtatgtttct ... cttgtggcagTTTTCAAGTACTCTTCTTTGCATAGTGTGGTTGAACTAGGTAGTGAGAGTG