1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCATCCGCCCGCAGCTGCTGCAGACAAAACCCTAGTGAGCAGAGCGTGAAAGCACCGGCCACCGGCCATGgttcgagatctgttgttcttattctcgccttccgtaattccagaactttcttcttctttttcatcttctattgttgtttgtttgcag
species | Glycine max |
transcript | GLYMA17G18200.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGACAAAACCCTAGTGAGCAGAGCGTGAAAGCACCGGCCACCGGCCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCEST: gi|10848274|gb|BF070805.1|BF070805
genomic: CAGACAAAACCCTAGTGAGCAGAGCGTGAAAGCACCGGCCACCGGCCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: CAGACAAAACCCTAGTGAGCAGAGCGTGAAAGCACCGGCCACCGGCCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCEST: gi|22933841|gb|BU550980.1|BU550980
genomic: CAGACAAAACCCTAGTGAGCAGAGCGTGAAAGCACCGGCCACCGGCCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: CAGACAAAACCCTAGTGAGCAGAGCGTGAAAGCACCGNNCACCGGCCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCEST: gi|209723888|gb|BW675234.1|BW675234
genomic: CAGACAAAACCCTAGTGAGCAGAGCGTGAAAGCACCGGCCACCGGCCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: CAGACAAAACCCTAGTGAGCAGAGCGTGAAAGCACCGGCCACCGGCCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: CAGACAAAACCCTAGTGAGCAGAGCGTGAAAGCACCGGCCACCGGCCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATCCGCCCGCAGCTGCTGCAGACAAAACCCTAGTGAGCAGAGCGTGAAAGCACCGGCCACCGGCCATGgttcgagatctgttgttcttattctcgccttccgtaattccagaactttcttcttctttttcatcttctattgttgtttgtttgcag
- - - - - - - - - - - - - - - - - - GAGCAG