1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CACAATTCCAATTCCTCTGGATCTCGTCTCGATCGATAGATCTCGAACATGAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTgtgagtttccattttcccttctcttcttcttttattctaattctagggtttccatcgcacctctctcatttccatattttattcttcttttag
species | Glycine max |
transcript | GLYMA17G15010.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCT TTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCGEST: gi|192308379|gb|FK000903.1|FK000903
genomic: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTgtgagtttcc ... cttcttttagTTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCG
EST: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCT TTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCGEST: gi|192320145|gb|FK012633.1|FK012633
genomic: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTgtgagtttcc ... cttcttttagTTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCG
EST: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCT TTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCGEST: gi|298168811|gb|HO009741.1|HO009741
genomic: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTgtgagtttcc ... cttcttttagTTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCG
EST: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCT TTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCGEST: gi|193340351|gb|FK307020.1|FK307020
genomic: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTgtgagtttcc ... cttcttttagTTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCG
EST: GAGCGCTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCT TTGAGCTGAAGAAGEST: gi|18721259|gb|BM523334.1|BM523334
genomic: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTgtgagtttcc ... cttcttttagTTGAGCTGAAGAAG
EST: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCT TTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCG
genomic: GAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTgtgagtttcc ... cttcttttagTTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAATTCCAATTCCTCTGGATCTCGTCTCGATCGATAGATCTCGAACATGAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTgtgagtttccattttcccttctcttcttcttttattctaattctagggtttccatcgcacctctctcatttccatattttattcttcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT