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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCCTGCCAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAGgtacgacttgcccacatctgtcgtatttctttttattatttttgtgtaaagggaaagagctctgtcaccaatgaagtagttgatctggaagagttttttt...

Basic information

species Glycine max
transcript GLYMA17G00260.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00260.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G59910.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCCTGCCAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAGgtacgacttgcccacatctgtcgtatttctttttattatttttgtgtaaagggaaagagctctgtcaccaatgaagtagttg-atctggaagagttttttt--
| |||||| |||| |||||||| || || ||||| ||||||||||| ||||||||  | |||||||||||| | |||||||| ||||| ||||| ||||||||   | |||   | | |    | | | |   ||| ||| |   | | |      | |||  |  ||   |    |  ||  || |      |||| |||  
CTAGAGCTACTCTTAGGACTTCGTTTCTCGCTTCTTGTGTCTCTGCTTGCCAGAGCCGGACAATGAGTCTTTCTGATACAGTAACTGTTATGGCTCAAAGgta-atcatgcaatcttttaatttctctttaagtataattctaaagcagatttggggtgcttag--actggttggctgtttctatttttccctgtttcttttt

upper sequence: GLYMA17G00260.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 4
CAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCCTGCCAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAGgtacgacttgcccacat--ctgtcgtatttctttttattatttttgtgtaaagggaaagagctctgtcaccaatgaagtagttgatctggaagagttttttt--
|||||||||| ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||   |||| | |   |  || |   || |||  |||  | | || |        ||  |  |     | || || | |  |||   |  | || |||  |   
CAAGAGCTGCCCTAAGAACTTCATTTCTTGCTTCATGTGTTTCTGCTTGCCAGAGTAGAACAATGAGCCTTGCAGATACAGTAACTGTAATGGCCCAAAGgtgaaacttactcttcttgcttttaaatgtctcattaacagtcttatcctcc---aattatatggaaaaacagtgcaatgtttggattt-aggaatttactaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23726896|gb|BU761451.1|BU761451
EST:     CAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAG                         GTTGCATGAGCGTCTCCAGGAATGCAATGGAGATGAAGTATTGAAGGCAGA
genomic: CAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAGgtacgacttg ... tttttgctagGTTGCATGAGCGTCTCCAGGAATGCAATGGAGATGAAGTATTGAAGGCAGA
EST: gi|208242307|gb|GE036069.1|GE036069
EST:     CAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAG                         GTTGCATGAGCGTCTCCAGGAATGCAAT
genomic: CAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAGgtacgacttg ... tttttgctagGTTGCATGAGCGTCTCCAGGAATGCAAT