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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGATATCATAGCCAATGCTGAGTTGGCAGATTACGGTCCGGTTCGCGGTACCATGGTTATTCGTCCCTACGGTTACGCCATTTGGGAAGCCATTCAGgttccttctcaaattctcgccacgtgtcccttttctgttcaatttgtgtaattttcatttatttgtttctgtgtgcgcag

Basic information

species Glycine max
transcript GLYMA16G29890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29890.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G52520.1 (Arabidopsis thaliana), 5'ss of exon 1
CCTCGATATCATAGCCAATGCTGAGTTGGCAGATTACGGTCCGGTTCGCGGTACCATGGTTATTCGTCCCTACGGTTACGCCATTTGGGAAGCCATTCAGgt-------tcctt--ctcaaattctcgccacgtgtcccttttctgttcaatttgtgtaattttcatttatttgtttctgtgtgcgcag
 || ||| | ||||| | ||||||  | || ||||| ||||||||||| ||||| ||||| |||||||| || |||||||| || |||||||| ||||||||       |  |    |||||||         |||   | ||   |   ||      ||||||| ||  |   ||  ||     ||||
TCTTGATGTTATAGCTAGTGCTGAACTCGCGGATTATGGTCCGGTTCGTGGTACTATGGTCATTCGTCCTTATGGTTACGCGATCTGGGAAGCGATTCAGgtgaaaaaattgtggattcaaattgattttgaatgttgatgtttcttcgtatcgcctcaattttcgtt-gtgaattgttg---atgcag

upper sequence: GLYMA16G29890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0050g00960.t01 (Vitis vinifera), 5'ss of exon 1
CCTCGATATCATAGCCAATGCTGAGTTGGCAGATTACGGTCCGGTTCGCGGTACCATGGTTATTCGTCCCTACGGTTACGCCATTTGGGAAGCCATTCAGgttccttctcaaattctcgccacgtgtccctt--ttctgttcaatttgtgtaattttcatttatttgtttctgtgtgcgcag-------------------
||| ||  |||||||||| || ||| | || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||  ||      |  |    |  | |  ||   || | ||   |||| || |||||  |  | |  |||  || ||   ||                   
CCTTGACGTCATAGCCAACGCCGAGCTCGCTGATTACGGTCCGGTTCGCGGCACCATGGTTATTCGTCCTTACGGTTACGCCATTTGGGAAGCAATTCAGgttgttttctgtttattttttattttttactccgttatattgtttttgagtgattttt-tgaaatgatttaggtttgtttagagtgttggttgtagttatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20075374|gb|BQ094157.1|BQ094157
EST:     GCACCATGGTTATTCGTCCCTACGGTTACGCCATTTGGGAAGCCATTCAG                         GAGTATTTGAATGTGAAGTTCAAGGAGACCGGACATAGTAACATGTATTTT
genomic: GTACCATGGTTATTCGTCCCTACGGTTACGCCATTTGGGAAGCCATTCAGgttccttctc ... gtgtgcgcagGAGTATTTGAATGTGAAGTTCAAGGAGACCGGACATAGTAACATGTATTTT