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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAAAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAGgtaatgactttttttggagataatcaggattcaagaaaatattttgatgaatacctttgatgctataacattgctggttaaatttttcactagatgattttaataaaatatgtgtgtttttgacacttttaggttgcatattaaccaagcaatgatgattgtag

Basic information

species Glycine max
transcript GLYMA16G14750.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G14750.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g05400.t01 (Vitis vinifera), 5'ss of exon 3
--TCGAAAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAGgtaatg-actttttttggagataatcaggattcaagaaaat-------attttgatga-atacctttgatgctataacattgctggttaaatttttcactagatgattttaataaaatatgtgtgtttttgacacttttaggttgcatattaac--caagcaatgatgattgtag---------
  | || |||||||||||||||||| |||| ||||||||||||||||||||||| || ||| ||||||| ||  | |  |||| | | | | ||   |    || |||       ||| | || | |||| ||| ||    ||   ||| ||||||   |||| | ||  | |||||  ||| || | ||  ||||   ||     |  |   ||| |  |  ||| |     |  ||| |          
TCTTGAGAAAGGAGTTGAACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAGgtgatttattagtttttgtgctcaacattctggtggagaatgatgatcattataataagatacattttatagattatttttgttggtta---ttttgaatattttattttcttaatattt-tgcattttatgcaagcaaaaatcatataatctctgcaaacctcacttgttgaatatcttgcag