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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCGGCATATTCCAGATCAACACTGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTgttagttattctttcatttgtcattcgccttttgttgattccacgttgcttggtgttttggtgatcgcttttttatagtattctcaatttaattgcagtg...

Basic information

species Glycine max
transcript GLYMA16G13410.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G13410.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g15110.1 (Oryza sativa), 5'ss of exon 1
CTGCCGGCATATTCCAGATCAACACTGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTgttagttattctttcatttgtcattcgccttttgttgattccacgt-tgcttggtgttttggtgatc--gcttttttatagtattctcaatttaattgcagtg--
|  | ||  | |||||||||||||| || || || || |||||| | || |||||||| ||||| || ||||| ||||||| |||||||||||| | | ||| ||   | |   |    | |||   |  | |    |  |||||| || ||||| ||    ||||   |        | |     || ||||   | |  |   
CGTCGGGGGTGTTCCAGATCAACACGGCGGTGTCGACGTTCCAGCGGCTGGTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGAGAGGATgtgaggc-tccccccgc--gccat--actctctacctaccccacgtctgtttggttttggtttgatttggagcgggggtcgggggatcgattttggttcgatttg

upper sequence: GLYMA16G13410.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G017329_T01 (Zea mays), 5'ss of exon 1
CTGCCGGCATATTCCAGATCAACACTGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTgttagtt-attctttcatttgtc-attcgccttttgttgattccacgttgcttggtgttttggtgatcgcttttttatagtattctcaatttaattgcagtg---
|  | ||| | |||||||||||||| |||||| |||| |||||| | || |||||||| ||||| || ||||| ||||||| |||||||||||| | | |||  ||    ||   ||   | | |  ||||||   ||  | || |   || ||   ||  | |   ||    |||| |      ||  |||   |   | |   
CGTCGGGCGTCTTCCAGATCAACACCGCCGTCGCCACGTTCCAGCGCCTTGTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGACAGGATgtgcgtccgctcccccacccgcctacccgccttaccttt-tgccccccagcctg---ttccgatcgccgtaccttta-atccccatctgttttggtattgcggat

upper sequence: GLYMA16G13410.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G120115_T02 (Zea mays), 5'ss of exon 1
CTGCCGGCATATTCCAGATCAACACTGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTgttagttattctttcatttgtcat-tcgccttttgttgattccacgttgcttggtgtt--ttggtgatcgcttttttatagtattctcaatttaattgcagtg
|  | ||| | |||||||||||||| || ||  |||| |||||| | ||||||||||| ||||| || ||||| || |||| |||||||||||| | | |||  ||    | ||| |   | |  || |||    |   ||     |||| | |  |           || |||  | | |    |||  |    |  | |  
CGTCGGGCGTCTTCCAGATCAACACCGCGGTTGCCACGTTCCAGCGCCTCGTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccgccttcctgccttacctcacctccaatctgttttg-attgccttgcctcaacccccatccgttttgatttcgcggactcggtccgctc-cggc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193359579|gb|FK324636.1|FK324636
EST:     GTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCT                         CCACAAGACAGGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTgttagttatt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAA
EST: gi|254328508|gb|GR835473.1|GR835473
EST:     GTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCT                         CCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTgttagttatt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAA
EST: gi|254328051|gb|GR835016.1|GR835016
EST:     GTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCT                         CCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTgttagttatt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAA
EST: gi|7795796|gb|AW781193.1|AW781193
EST:     GTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCT                         CCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTgttagttatt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAA