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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGAATCCTACCCTGCCTATCATGATTTCTACCTTCTCCCCATTTTCGCTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtaccttacctttctcattctctcttcttctcttctcttctatcaccgttgactcacgactaatcacatattacttattaaacttgtaatcaaagtttattcaaacaaactctgctgcctttgacttttatgttcactctgctttatatatgacag

Basic information

species Glycine max
transcript GLYMA16G12080.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760327|gb|AI965754.1|AI965754
EST:     CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG                         AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: gi|151411962|gb|EV281773.1|EV281773
EST:     CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG                         AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: gi|10238953|gb|BE807841.1|BE807841
EST:     CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG                         AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: gi|193675477|gb|FK616509.1|FK616509
EST:     CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG                         AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: gi|193417921|gb|FK384313.1|FK384313
EST:     TTTCTCGACCGATTCATATTCGAG                         AAAGTGGCTAGACGATTGATTTTTTGGAAAGGGGCATGCGGTCGCTGGACT
genomic: TTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGA-TTTTTGGAAAGGGGCATGCGG-CGCTGGACT
EST: gi|7685255|gb|AW755903.1|AW755903
EST:     CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG                         AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: gi|23063878|gb|BU578660.1|BU578660
EST:     CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGATTGATTCATATTCGAG                         AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: gi|151408094|gb|EV277902.1|EV277902
EST:     CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG                         AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: gi|298185707|gb|HO030920.1|HO030920
EST:     CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG                         AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC