Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTTTAGAAGAAGCCAACAATGGTACCATCTGCTGCGACCTCTCTTTCTTTTTCTCTCAGgttagtttttctcattcatttcccttcttttctttgctccttatggatcgcgtttttttttttcttttttttaattttttctcacgccttttagttcaat...

Basic information

species Glycine max
transcript GLYMA15G41330.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38192386|gb|CF921592.1|CF921592
EST:     AAGCCAACAATGGTACCATCTGCTGCGACCTCTCTTTCTTTTTCTCTCAG                         ATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
genomic: AAGCCAACAATGGTACCATCTGCTGCGACCTCTCTTTCTTTTTCTCTCAGgttagttttt ... gtgagtgcagATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
EST: gi|209699717|gb|BW652089.1|BW652089
EST:     TGCTGCGACCTCTCTTTCTTTTTCTCTCAG                         ATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
genomic: TGCTGCGACCTCTCTTTCTTTTTCTCTCAGgttagttttt ... gtgagtgcagATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
EST: gi|38192385|gb|CF921591.1|CF921591
EST:     AAGCCAACAATGGTACCATCTGCTGCGACCTCTCTTTCTTTTTCTCTCAG                         ATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
genomic: AAGCCAACAATGGTACCATCTGCTGCGACCTCTCTTTCTTTTTCTCTCAGgttagttttt ... gtgagtgcagATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
EST: gi|38193672|gb|CF922878.1|CF922878
EST:     AAGCCAACAATGGTACCATCTGCTGCGACCTCTCTTTCTTTTTCTCTCAG                         ATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
genomic: AAGCCAACAATGGTACCATCTGCTGCGACCTCTCTTTCTTTTTCTCTCAGgttagttttt ... gtgagtgcagATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
EST: gi|192305316|gb|FG994012.1|FG994012
EST:     TTTTTCTCTCAG                         ATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
genomic: TTTTTCTCTCAGgttagttttt ... gtgagtgcagATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
EST: gi|13562525|gb|BG550745.1|BG550745
EST:     CTGCTGCGACCTCTCTTTCTTTTTCTCTCAG                         ATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
genomic: CTGCTGCGACCTCTCTTTCTTTTTCTCTCAGgttagttttt ... gtgagtgcagATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
EST: gi|213617097|gb|DB963570.1|DB963570
EST:     AATGGTACCATCTGCTGCGACCTCTCTTTCTTTTTCTCTCAG                         ATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
genomic: AATGGTACCATCTGCTGCGACCTCTCTTTCTTTTTCTCTCAGgttagttttt ... gtgagtgcagATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
EST: gi|12688265|gb|BG154601.1|BG154601
EST:     GCTGCGACCTCTCTTTCTTTTTCTCTCAG                         ATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC
genomic: GCTGCGACCTCTCTTTCTTTTTCTCTCAGgttagttttt ... gtgagtgcagATTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACTTTTAGAAGAAGCCAACAATGGTACCATCTGCTGCGACCTCTCTTTCTTTTTCTCTCAGgttagtttttctcattcatttcccttcttttctttgctccttatggatcgcgtttttttttttcttttttttaattttttctcacgccttttagttcaat

- - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcccttc