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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCTATATAAGGAGGCAAGTTGAGTTGCGTCAGCCTCTTTGCCCCGTTTTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTGgttagtttctcttctttcagatctatcatctttcaaccatgctccagctcctactagatgcattaaccatcgtacctatcccattcttctttccgtgatt...

Basic information

species Glycine max
transcript GLYMA15G05630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18735474|gb|BM528785.1|BM528785
EST:     ATTCTTTCGCCGCTTCTCTCTTTCCTTGTG                         GTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
genomic: ATTCTTTCGCCGCTTCTCTCTTTCCTTGTGgttagtttct ... tttatgtcagGTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
EST: gi|213593221|gb|DB969907.1|DB969907
EST:     TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTG                         GTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
genomic: TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTGgttagtttct ... tttatgtcagGTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
EST: gi|298187541|gb|HO034690.1|HO034690
EST:     TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTG                         GTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
genomic: TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTGgttagtttct ... tttatgtcagGTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
EST: gi|213599567|gb|DB964366.1|DB964366
EST:     TTATTGCATCTCAGAGGCCGATTCTTTCGCCACTTCTCTCTTTCCTTGTG                         GTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
genomic: TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTGgttagtttct ... tttatgtcagGTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
EST: gi|193533491|gb|FK490256.1|FK490256
EST:     TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTG                         GTGTTCTCGTGTTGCTCGTAACAAA-TGGTTGG
genomic: TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTGgttagtttct ... tttatgtcagGTGTTCTCGTGTTGCTCGTAACAAAATGGTTGG
EST: gi|192298859|gb|FG987604.1|FG987604
EST:     TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTG                         GTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
genomic: TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTGgttagtttct ... tttatgtcagGTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
EST: gi|298189793|gb|HO038196.1|HO038196
EST:     TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTG                         GTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA
genomic: TTATTGCATCTCAGAGGCCGATTCTTTCGCCGCTTCTCTCTTTCCTTGTGgttagtttct ... tttatgtcagGTGTTCTCGTGTTGCTCGTAACAAAATGGTTGGAAGTGTTGACGCTTTGAA