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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGGCGGGGCGTGGCGGAGCTGAATCGGAGGCATGAAGCTCACCGTGAAGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcatatgatctcattcccaacccaattctgctttttaatttcattcttccaaatcctatgcatttcttaattgtgatgttttatcttcacctcag

Basic information

species Glycine max
transcript GLYMA13G44910.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193542174|gb|FK497476.1|FK497476
EST:     AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT                         ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: gi|192315478|gb|FK007796.1|FK007796
EST:     AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT                         ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: gi|298173138|gb|HO020122.1|HO020122
EST:     AGACTCTGAAAGGCAGCCACTTCGAAATCAGGGTTCAGCCCTCAGACACT                         ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: gi|193710246|gb|FK645506.1|FK645506
EST:     AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT                         ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAA
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAA
EST: gi|192315477|gb|FK007795.1|FK007795
EST:     AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT                         ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: gi|298191541|gb|HO039020.1|HO039020
EST:     AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT                         ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: gi|193476729|gb|FK439562.1|FK439562
EST:     AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT                         ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGAC
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGAC
EST: gi|193323635|gb|FK290487.1|FK290487
EST:     AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT                         ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: gi|192307602|gb|FG999641.1|FG999641
EST:     AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT                         ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC