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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGATCGTCGGTGCTCGCGGCGCGCCCGTCGCGCATCGCCGAGTGCCTCGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgatgtttctttttgtgtcgcctctgttaatcttcacgttttgttgtgattttttttcccttttaatttgcatatatttgatgtgttgaattta...

Basic information

species Glycine max
transcript GLYMA13G37050.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G37050.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g15520.1 (Oryza sativa), 5'ss of exon 1
--GGTCGATCGTCGGTGCTCGCGGCGCGCCCGTCGCGCATCGCCGAGTGCCTCGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgatgtttctttttgtgtcgcctctgttaatcttcacgttttgttgtgattttttttcccttttaa--tttgcatatatttgatgtgttg--aattta
  || ||  |  |||   |||   | |||||  ||||||||||||||||||||||||| ||||| |||||   |||  ||||||| || |||||||| || ||| |  |    ||| |   | || ||  |||   | | |    | ||| |||  || ||| ||   | ||||  |||||| || |||| | | |||   || | 
GGGGGCGGCC--CGGCCGTCGGATCTCGCCCCGCGCGCATCGCCGAGTGCCTCGTCGGCGACGAGACCGGGGTCATCGTCTTCACCGCCCGCAACGAGCAAGgtgatgttgcctttttgactttg-cgtttctacgagtttatttgattt-ttgcaatgtttgttatttgttaaattttgca-atgtttgttattttgcggatct-

upper sequence: GLYMA13G37050.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G825437_T04 (Zea mays), 5'ss of exon 1
-GGTCGATCGTCGGTGCTCGCGGCGCGCCCGTCGCGCATCGCCGAGTGCCTCGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgatgtttctttttgtgtcgcc-tctgttaatcttcacgttttgttgtgattttttttcccttttaatttgcatatatttgatgtgttgaattta-
 |  |   || ||  ||   || | ||| || ||||||||||||||||||||||||||||||| |||||   |||  | ||||| || |||||||| || |||  |   |||||| |  |  | || || ||  |  ||||      | || ||||  |   |     |  | || |||   |  |  || ||  ||   || 
GGCGCACCCGCCGCCGCCT-CGTCCCGCGCGCCGCGCATCGCCGAGTGCCTCGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtatgtttgtcctgctctccccctccctctatctatctcctctgctgtggatgactagatttcatgatctgccactgct--atctgacgacgctac

upper sequence: GLYMA13G37050.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G825437_T02 (Zea mays), 5'ss of exon 2
GGTCGATCGTCGGTGCTCGCGGCGCGCCCGTCGCGCATCGCCGAGTGCCTCGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgatgtttctttttgtgtcgcc-tctgttaatcttcacgttttgttgtgattttttttcccttttaatttgcatatatttgatgtgttgaattta-
                          | || ||||||||||||||||||||||||||||||| |||||   |||  | ||||| || |||||||| || |||  |   |||||| |  |  | || || ||  |  ||||      | || ||||  |   |     |  | || |||   |  |  || ||  ||   || 
--------------------------CGCGCCGCGCATCGCCGAGTGCCTCGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtatgtttgtcctgctctccccctccctctatctatctcctctgctgtggatgactagatttcatgatctgccactgct--atctgacgacgctac

upper sequence: GLYMA13G37050.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G067522_T01 (Zea mays), 5'ss of exon 1
-GGTCGATCGTCGGTGCTCGCGGCGCGCCCGTCGCGCATCGCCGAGTGCCTCGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgatgtt-tctttttgtgtcgcctctgttaatcttcacgttttgttgtgattttttttcccttttaatttgca-tatatttgatgtgttgaattta
 |  |   || ||  || | |  | ||| || ||||||||||||||||||||||||| ||||| |||||  ||||  ||||||| || |||||||| || ||| |     |||  ||   |  |     |||||     | |  |  | | | ||   |||| | | |   |     | | || ||||       ||      
GGCGCACCCGCCGCCGCCC-CATCCCGCGCGCCGCGCATCGCCGAGTGCCTCGTCGGGGACGAGACCGGCGCCATCGTCTTCACCGCCCGCAACGACCAAGgtgaacgtttgtcctcccctcctacgtgctctgccttccctttccctctatcgttcgttttctgctccgctgtggaggactagatttctctacctgcgac--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19935548|gb|BQ080484.1|BQ080484
EST:     CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|58022150|gb|CX708891.1|CX708891
EST:     CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|26047748|gb|CA784442.1|CA784442
EST:     CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|298163086|gb|HO011819.1|HO011819
EST:     CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|7146979|gb|AW508901.1|AW508901
EST:     CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|58022462|gb|CX709203.1|CX709203
EST:     CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|9258840|gb|BE346987.1|BE346987
EST:     CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGG                         TG-ACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|19935546|gb|BQ080483.1|BQ080483
EST:     CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|15000476|gb|BI321290.1|BI321290
EST:     CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|193633342|gb|FK582914.1|FK582914
EST:     CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG