Sequence
atgc intronic sequence ATGC exonic sequenceAATCGGCGACACCTTCAACGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctgttcctctctctctccctccctctcttaaactttttgtttgggatcttttttttttctttccctaatacgttgttttaggttaactcatgaaattc...
Basic information
species | Glycine max |
transcript | GLYMA13G21320.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G21320.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
AATCGGCGACACCTTCAACGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctgttc------ctctctctctccctccctctcttaaactttttgtttgggatcttttttttttctttccctaatacgttgttttaggttaactcatgaaattc
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CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgttcgaatcccttttgccccccccccccccccttaaatttcctcgtggaatgggcgttccccccttttcccttcc-tagattcgtgatgatttgtgg-----
upper sequence: GLYMA13G21320.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G53030.1 (Arabidopsis thaliana), 5'ss of exon 1
AATCGGCGACACCTTCAACGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctgttcctctctctctccctccctctcttaaactttt----tgtttgggatcttttttttttctttccctaat-acgttgttttag-gttaactcatgaaattc----
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GATCGGTGACTCATTCAAAACCGGCCGGTACGTTGTCCAGAGCAAACTCGGTTGGGGCCATTTCTCTACTGTTTGGCTCTCCTGGGATACTCAATCCTCTgtacgcatctatctctctctctcgccacacgaattgcttgaaatgctttagagattaatttttcgttgctttgtttgtgtgattttcttactcgtatatcgaatgtacag
upper sequence: GLYMA13G21320.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g04220.t01 (Vitis vinifera), 5'ss of exon 1
AATCGGCGACACCTTCAACGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctgttcctctctctctccctccctctcttaaactttttgtttgggatcttttttttttctttccctaatacgttgttttaggttaactcatgaaattc-
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AATCGGCGACACCTTCAAGAACGGTCGGTACATCGTTCAAACCAAGCTCGGATGGGGCCATTTCTCAACTGTCTGGCTTGCTTGGGACACCTTAAACTCCgtacgcctcccgccatttctctctttgtgt-gtattttacggatgacaaataattattattttctatgaatgttgtgattgggagtgattaatttttaacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209721194|gb|BW665725.1|BW665725EST: GTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCT AGATACGTGGCTTTGAAAGTTCAGAAGAGTGCTCAGCACTACACCGAGGCG
genomic: GTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctgttcct ... agatctgcagAGATACGTGGCTTTGAAAGTTCAGAAGAGTGCTCAGCACTACACCGAGGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATCGGCGACACCTTCAACGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctgttcctctctctctccctccctctcttaaactttttgtttgggatcttttttttttctttccctaatacgttgttttaggttaactcatgaaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc