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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGAAATTGGTATTGGGTCACCTCCACAAAGCTTCAGAGTTGTGTTTGACACTGGTAGCTCGAATCTGTGGGTCCCTTCCGCCAAATGCGTCTTGTCTgtaagttatatagtttatgatctgttttattttatttttttttgtcgtcatgacattagtatagagtatccgtcaattttattgatgattaatctctgct...

Basic information

species Glycine max
transcript GLYMA13G17710.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17710.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ36863 (Selaginella moellendorffii), 5'ss of exon 1
TGGCGAAATTGGTATTGGGTCACCTCCACAAAGCTTCAGAGTTGTGTTTGACACTGGTAGCTCGAATCTGTGGGTCCCTTCCGCCAAATGCGTCTTGTCTgtaagttatatagtttatgatctgttttattttatttttttttgtcgtcatgacattagtatagagtatccgtcaattttattgatgattaatctctgct
 ||||| || || ||||||   || || ||    ||||  ||  | ||||||||||||||||||||||| ||||| || || |  ||||| ||  |||| ||||||  |       ||        || ||| ||   || |||  |                                                     
CGGCGAGATCGGCATTGGGAGCCCGCCGCAGGAGTTCACTGTGATTTTTGACACTGGTAGCTCGAATCTCTGGGTTCCATCGGGAAAATGTGTTCTGTCGgtaagtatttccaggaattccacacgttttttcatggattcttgcag-----------------------------------------------------

upper sequence: GLYMA13G17710.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ27796 (Selaginella moellendorffii), 5'ss of exon 1
TGGCGAAATTGGTATTGGGTCACCTCCACAAAGCTTCAGAGTTGTGTTTGACACTGGTAGCTCGAATCTGTGGGTCCCTTCCGCCAAATGCGTCTTGTCTgtaagttatatagtttatgatctgttttattttatttttttttgtcgtcatgacattagtatagagtatccgtcaattttattgatgattaatctctgct
 ||||| || || ||||||   || || ||    ||||  ||  | ||||||||||||||||||||||| ||||| || || |  ||||| ||  |||| ||||||  |  ||   ||        || ||| ||   || |||  |                                                     
CGGCGAGATCGGCATTGGGAGCCCGCCGCAGGAGTTCACTGTGATTTTTGACACTGGTAGCTCGAATCTCTGGGTTCCATCGGGAAAATGTGTTCTGTCGgtaagtattccagga-attccacacgttttttcatggattcttgcag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394482|gb|EV264353.1|EV264353
EST:     ACACTGGTAGCTCGAATCTGTGGGTCCCTTCCGCCAAATGCGTCTTGTCT                         ATTGCTTGCTATTTTCATTCCAAGTATAGATCGAAGCTATCTAACTCCTAT
genomic: ACACTGGTAGCTCGAATCTGTGGGTCCCTTCCGCCAAATGCGTCTTGTCTgtaagttata ... ctacctgcagATTGCTTGCTATTTTCATTCCAAGTATAGATCGAAGCTATCTAACACCTAT