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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGGCTGAAGATCTCGATTAGCCGAAAATTGCAAGAACGGCTTCAGGCTCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgttgcatgtaataattgctgcttgctgcattctttaacaatggctatgttttgttttttgaattaatgttgaaaagcttcgttgtggtttag

Basic information

species Glycine max
transcript GLYMA12G34820.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287556|gb|BI471447.1|BI471447
EST:     TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|7042468|gb|AW472362.1|AW472362
EST:     TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|192327965|gb|FK023826.1|FK023826
EST:     TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|7285517|gb|AW598004.1|AW598004
EST:     TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|31475472|gb|CD417500.1|CD417500
EST:     TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|192304981|gb|FG996113.1|FG996113
EST:     AGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: AGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|10238770|gb|BE807658.1|BE807658
EST:     TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|192333924|gb|FK024737.1|FK024737
EST:     TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|33387458|gb|CA850665.1|CA850665
EST:     TGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|21286136|gb|BQ474007.1|BQ474007
EST:     TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|13791202|gb|BG653793.1|BG653793
EST:     TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|10255581|gb|BE823347.1|BE823347
EST:     NCTTGCGATCAACAAACGCAGCGTTTTGATNNCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: gi|192333115|gb|FK026444.1|FK026444
EST:     TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAG                         AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: TCTTGCGATCAACAAACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGgtaccgtcgt ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG