Sequence
atgc intronic sequence ATGC exonic sequenceGTGCGCGTGATGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAAGCCTGGGAGAATATACTGCTCTGGCATTTGCTGGGGCTTTTAGgtgagttaccaagagtaactaccatttattacaatggcttttctattgttttccctttcatttcttcattttcttttcatattttttccaacgtatcaag...
Basic information
species | Glycine max |
transcript | GLYMA11G29520.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G29520.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G029543_T01 (Zea mays), 5'ss of exon 4
GTGCGCGTGATGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAAGCCTGGGAGAATATACTGCTCTGGCATTTGCTGGGGCTTTTAGgtga-------gttaccaagagtaactaccatttattacaatgg--cttttctattgttttccctttcatttcttcat-----tttcttttcatattttttccaacgtatcaag-----------------------------------------------------
|||| || |||||||| || | | ||| |||| || ||||||||||||||| | || ||||||| ||||| ||||| |||||||| || |||||||||| ||| || | | ||||| ||| | | || || || | | ||| || | | || |||| | ||| | |
GTGCACGCGATGGAGGCCAAGATGTGATTAACTCTGTAGATGTTACATGTGGTCTCAGTTTGGGAGAGTATACCGCTCTTGCATTTGCCGGTGCTTTTAGgtattcctttcgttctatccagaagcactcatttgttatgtcaaaccatctccatcgtggaatgaacaaagcatacatgataattgataagcttacttttgcagctgtaacttggatttgatagtacatcaactacacacactaacacatcctatatcatcatgcag
upper sequence: GLYMA11G29520.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g07380.t01 (Vitis vinifera), 5'ss of exon 4
GTGCGCGTGATGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAAGCCTGGGAGAATATACTGCTCTGGCATTTGCTGGGGCTTTTAGgtgagttaccaagagtaactaccatttattacaatggcttttctat-tgttttccctttcatttct-tcattttcttttcatattttttccaacgtatcaag
|||| |||||||||||||||||||| ||||| || || ||||| ||||| ||| ||||| |||||||||| |||||| | ||||||||||| ||||| ||||| | | | || || ||| | | |||| || ||| || ||| | | | ||| | | |||| |||| || | |
GTGCTCGTGATGGAGGTCAGCAGATAATTGATTCTGTAGATGTCACATGCGGTCTAAGCTTGGGAGAATACACTGCTTTAGCATTTGCTGGAGCTTTCAGgtgtgccatgtaatttag-tagcatg-acaataatgctttcagtatatgcttttcttaccgtttaaatgaaagcaacatcatgcttttcttaatagtgaatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4306310|gb|AI443886.1|AI443886EST: GGTTTAAGCCTGGGAGAATATACTGCTCTGGCATTTGCTGGGGCTTTTAG CTTTGAAGATGGACTCAAGTTGGTCAAACTGAGGGGTGAGGCCATGCAG
genomic: GGTTTAAGCCTGGGAGAATATACTGCTCTGGCATTTGCTGGGGCTTTTAGgtgagttacc ... gacttttaagCTTTGAAGATGGACTCAAGTTGGTCAAACTGAGGGGTGAGGCCATGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCGCGTGATGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAAGCCTGGGAGAATATACTGCTCTGGCATTTGCTGGGGCTTTTAGgtgagttaccaagagtaactaccatttattacaatggcttttctattgttttccctttcatttcttcattttcttttcatattttttccaacgtatcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA