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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTGGTAGTCACAAGAAGGGCATACCTATCAGATCCGTTGATTGCCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATCCgtaagtattatttatgcacatacaagaacaatcacaacactaattagttttttttttctctctgtatttttgcccttcattgtcgtgtgctctacctact...

Basic information

species Glycine max
transcript GLYMA11G20220.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G20220.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g22350.1 (Oryza sativa), 5'ss of exon 3
-GACATTGGTAGTCACAAGAAGGGCATACCTATCAGATCCGTTGATTGCCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATCCgtaagtatt-atttatgcacatacaagaacaatcacaacactaattagttttttttttctctctgtatttttgcccttcattgtcgtgtgctctacctact
    ||  | ||  |    ||||  || |||  |||| |  |||| |||||| |||||||    |||||||| ||||| |||||||||||||||||||| ||| |||    |    |     ||      |  ||  | | | |||       ||| |    |    |||||||  | | ||| |  |    |      | |
ATCAATCTGCAGG-ATGCTAAGGATATCCCTTACAGAGCTCTTGACTGCCAAGCTTGTTGCCCTGGCTTCTTCTGCCCCCATGGTCTCACTTGCATGATACgtgagttcccacgcctagctctagctactccctccgatcccaaatataaccatttctggaattcaaatttttgtacat-attttattccaataatgggaat

upper sequence: GLYMA11G20220.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G166889_T01 (Zea mays), 5'ss of exon 3
GACATTGGTAGTCACAAGAAGGGCATACCTATCAGATCCGTTGATTGCCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATCCgtaagtatta-----tttatgcacatacaagaaca-atcacaacactaattagttttttttttctctctgtatttttgcccttcattgtcgtgtgctctacctact
| ||     |   ||        ||| ||   |||| || |||| |||| |  ||| ||||  |||||||||||||||||||| |||||||||||||| |||||||| ||       ||   ||   |   | ||  ||    ||  ||| | |  | || |  | | | ||| | |  |  |     ||                
GTCAACTTAAAAGACGCCGTCAACATCCCGTCCAGAACCCTTGACTGCCGAGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagtaataggaagcctagctactgccctcagcatgtcctgccagcaat-aatggtcttgtgatatatatatatctatctattcacttcacag------------

upper sequence: GLYMA11G20220.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G60740.1 (Arabidopsis thaliana), 5'ss of exon 3
GACATTGGTAGTCACAAGAAGGGCATACCTATCAGATCCGTTGATTGCCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATCCgtaagt--attatttatgcacatacaagaacaatcacaacactaattagttttttttttctctctgtatttttgcccttcattgtcgtgtgctctacctact
|       ||   || | |||    | ||| | ||| |     | ||    |||||||| | ||| ||||| ||||||| |||| |||| ||||||||||||||||  |     | |  |||| ||  ||| || | |     | |  ||| ||  |   | |||  || ||    | ||| | |  ||||           
GTTGACCTTAAAGACGACAAGAATGTTCCTGTTAGAACTCAGCAATGTGCGCCTTGTTGCGCAGGTTTCTTCTGCCCTCGTGGTATCACCTGCATGATCCgtaagttaacctcctttaaacattcagaaacgatgaaag----attcggttgttgatccatttcta-atgttgtttcctcactatgatgtgaag--------