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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTCTCTACGCAGATCGAATCAAAGCTCCTCCATCCAATTCCGAGATGAGCACTGGCGACCTTCTCAGCATCGAACCTCTCGAACTTAAGTTCTTCTgtgcgttctttttctatccttttacgctactatttttcttctcctaaggtttcattttcattccctttctgctctttcag

Basic information

species Glycine max
transcript GLYMA11G03480.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03480.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0154g00500.t01 (Vitis vinifera), 5'ss of exon 1
CAAATTCTCTACGCAGATCGAATCAAAGCTCCTCCATCCAATTCCGAGATGAGCACTGGCGACCTTCTCAGCATCGAACCTCTCGAACTTAAGTTCTTCTgt--gcgttctttttctatccttttacgctactatttttcttctcctaaggtttcattt--tcattccctttctgctctttcag----------------
                                                |||||||| || || |||||||||||||||||||| ||||||||||||   |||  || ||  |  | |     | |   |  | | | |   | | |   | ||| ||||  |  || | ||| | |  |||| |                
------------------------------------------------ATGAGCACGGGAGAGCTTCTCAGCATCGAACCTCTGGAACTTAAGTTCCCTTgtaagcatttctgctttggatctgttttcgtcgaatatatcttttccgcgttttgatttctttttttcttttttaccatttctgttttcttcttggaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309969|gb|FK000617.1|FK000617
EST:     GAGCACTGGCGACCTTCTCAGCATCGAACCTCTCGAACTTAAGTTCTTCT                         TTGAGCTCAAGAAGCAGATATCATGCTCTCTTATATTGTCAAATAAGACCG
genomic: GAGCACTGGCGACCTTCTCAGCATCGAACCTCTCGAACTTAAGTTCTTCTgtgcgttctt ... gctctttcagTTGAGCTCAAGAAGCAGATATCATGCTCTCTTATATTGTCAAATAAGACCG
EST: gi|298163319|gb|HO012052.1|HO012052
EST:     GAGCACTGGCGACCTTCTCAGCATCGAACCTCTCGAACTTAAGTTCTTCT                         TTGAGCTCAAGAAGCAGATATCATGCTCTCTTATATTGTCAAATAAGACCG
genomic: GAGCACTGGCGACCTTCTCAGCATCGAACCTCTCGAACTTAAGTTCTTCTgtgcgttctt ... gctctttcagTTGAGCTCAAGAAGCAGATATCATGCTCTCTTATATTGTCAAATAAGACCG
EST: gi|151411997|gb|EV281808.1|EV281808
EST:     GAGCACTGGCGACCTTCTCAGCATCGAACCTCTCGAACTTAAGTTCTTCT                         TTGAGCTCAAGAAGCAGATATCATGCTCTCTTATATTGTCAAATAAGACCG
genomic: GAGCACTGGCGACCTTCTCAGCATCGAACCTCTCGAACTTAAGTTCTTCTgtgcgttctt ... gctctttcagTTGAGCTCAAGAAGCAGATATCATGCTCTCTTATATTGTCAAATAAGACCG