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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACCTCCTCAATCCGAGGATTCCGACGTTTCCACCGTCATTCCTCCCGACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccatttctatttcccctttttttctcattcaaagaaagttcgcggctgaaatgtttttttcgttgcactgaattgattaactgcccag

Basic information

species Glycine max
transcript GLYMA10G43740.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43740.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g55630.1 (Oryza sativa), 5'ss of exon 1
TGCACCTCCTCAATCCGAGGATTCCGACGTTTCCACCGTCATTCCTCCCGACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccatttctatttcccctttttttctcattcaaagaaagttcgcggctgaaatgtttttttcgttgcactga-attgattaactgcccag---------
  |        |    ||||   | |  | |       | || || |||||||| ||||| || || ||||||||||||||||| ||||||||||| |||||  |    |  |         |  ||   ||||      || |    | |        |||| |  || |  ||   |  |  ||| | |           
CACGGAGGAGGAGGAGGAGGGAGCAGGTGCTGAGGTGATGATCCCGCCCGACAACCGCATCCCCGCCACCATCATCACCGGCTTCCTCGGCTCCGGGAAGgt--caggcttaaaaataataataattaagattcggctttaggtgaaaggtatccgtgattttgcactgtagagatgcttgtatactactctcccacagtga

upper sequence: GLYMA10G43740.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G180418_T03 (Zea mays), 5'ss of exon 6
TGCACCTCCTCAATCCGAGGATTCCGACGTTTCCACCGTCATTCCTCCCGACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccatttctatttcc---cctttttttctcattcaaagaaagttcgcggct---gaa----atgtttttttcg--ttgcactg-aattgattaactgcccag
 ||  |          |||   || |  ||    ||  | || || |||||||||||||| || || ||||||||||||||||| |||||||| ||||||||   | |     |  ||   |||   |    |  |     |  || ||||| |   |||    |||| ||  | |  || ||||| ||  ||||| ||      
CGCGGCGGAGGCGGAGGAGTGCTCGGGTGTGGAGACGCTGATCCCGCCCGACAATCGCATCCCCGCCACCATCATCACCGGCTTCCTCGGCTCTGGCAAGgtccgcgtccgcctgccctaacctcagtgctaccgttggttagggtacgcggtttgggaagtccatgtgttgctagacttacactggaaacgattagcta-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23063927|gb|BU578701.1|BU578701
EST:     ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAG                         ACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
genomic: ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccattt ... aactgcccagACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
EST: gi|20448580|gb|BQ252704.1|BQ252704
EST:     ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAG                         ACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
genomic: ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccattt ... aactgcccagACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
EST: gi|16279819|gb|BI943632.1|BI943632
EST:     ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAG                         ACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
genomic: ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccattt ... aactgcccagACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
EST: gi|19452360|gb|BM953770.1|BM953770
EST:     ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAG                         ACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
genomic: ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccattt ... aactgcccagACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
EST: gi|16281457|gb|BI944497.1|BI944497
EST:     ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAG                         ACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
genomic: ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccattt ... aactgcccagACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
EST: gi|213608979|gb|DB962905.1|DB962905
EST:     ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAG                         ACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
genomic: ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccattt ... aactgcccagACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
EST: gi|20448652|gb|BQ252776.1|BQ252776
EST:     ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAG                         ACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG
genomic: ACAATCGCATACCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccattt ... aactgcccagACGACACTGCTGAACCATATTCTGACCGCGGAACATGGAAAGAAAATTGCG