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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGGCTCGCATCGAGAAACTCATTGCTGAGAAGCAATTTTATGCCGCGGTTCAATTGCATGTGCAATCAATACTGATGCTTGAGCGAGGCCTCCAAACTgtaagattttaacttactatcattatcctattttcagcatgctttgcttagagggcttctatagttctaatttttgtttcttgtatttatatgttttcgt...

Basic information

species Glycine max
transcript GLYMA10G35190.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35190.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g04770.t01 (Vitis vinifera), 5'ss of exon 3
TCCGGCTCGCATCGAGAAACTCATTGCTGAGAAGCAATTTTATGCCGCGGTTCAATTGCATGTGCAATCAATACTGATGCTTGAGCGAG---GCCTCCAAACTgtaagattttaacttactatcattatcctattttcagcatgctttgcttagagggcttctatagttctaatttttgtttcttgtatttatatgttttcgt--------
    ||||| || ||||| ||||||||||| ||||| |||||||| || |||||||||||||  || |||| | ||||||| ||| |||   |||| ||||| || || |||| | ||   ||  | ||  || ||| |       ||  |||      |  | |  ||   ||| || | | ||||| | |||    ||| |        
---AGCTCGTATTGAGAAGCTCATTGCTGAAAAGCAGTTTTATGCTGCAGTTCAATTGCATGCACAGTCAACATTGATGCTGGAGAGAGAGGGCCTTCAAACGgttagttttttaattttaattttaattttaattttaa------ttaattaattaattaattttattt--attattatcttttgtaataataccacttcattaaaatca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426635|gb|CA938155.1|CA938155
EST:     TTCAATTGCATGTGCAATCAATACTGATGCTTGAGCGAGGCCTCCAAACT                         GTTGGGGCGCTTCAAGATGTCCGTTCTGAGTTAACGAAGTTACGTGGAGTC
genomic: TTCAATTGCATGTGCAATCAATACTGATGCTTGAGCGAGGCCTCCAAACTgtaagatttt ... tgtggcccagGTTGGGGCGCTTCAAGATGTCCGTTCTGAGTTAACGAAGTTACGTGGAGTC
EST: gi|254348735|gb|GR852414.1|GR852414
EST:     TTCAATTGCATGTGCAATCAATACTGATGCTTGAGCGAGGCCTCCAAACT                         GTTGGGGCGCTTCAAGATGTCCGTTCTGAGTTAACGAAGTTACGTGGAGTC
genomic: TTCAATTGCATGTGCAATCAATACTGATGCTTGAGCGAGGCCTCCAAACTgtaagatttt ... tgtggcccagGTTGGGGCGCTTCAAGATGTCCGTTCTGAGTTAACGAAGTTACGTGGAGTC