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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGCCGCCGGCGGTATTGCGCCGCCGTTGGAGGTGGACGGGCTGCCGGAGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacgagttaagactttagtcttatttctatgaaaattcatgttgttatgatttttaaggtattactattatggttggtccaagaataaggccgtc...

Basic information

species Glycine max
transcript GLYMA10G35100.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35100.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g05120.t01 (Vitis vinifera), 5'ss of exon 1
TAATGCCGCCGGCGGTATTGCGCCGCCGTTGGAGGTGGACGGGCTGCCGGAGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgta-cgagttaagactttagtcttatttc--------tatgaaaattcatgttgttatgatttttaaggtattactattatg-gttggtccaagaataaggccgtc---------------
    |  |  |  |  | |||  || | ||||||||||| ||| ||||||||| |||||| ||||| ||||||||||||||||| || || ||| | |||||   |     | ||   ||| | || | |||         |||  ||||||||  |          | ||||    |    |||   || ||| |||   ||||   |                
GGGAGGAGTTGCGGAGACTGCAGCGGCCTTGGAGGTGGATGGGTTGCCGGAGAGTTTTGACTGGAGGGAGAAAGGAGCTGTCACTGAGGTGAAGATGCAGgtaattggttcggtatttcttcactcatttttgctaattgatatttaaattcattcttcagctgggctgaaggccccatatatatatattagtcaaaggcaaaggagcttgtaatattgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298169797|gb|HO018421.1|HO018421
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGC
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGC
EST: gi|7042256|gb|AW472150.1|AW472150
EST:     AGAATTGTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAAATGTGGATCATNGCTGG-CTTTCANCACCACANGATCTATAGAANG
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCAT-GCTGGGCTTTCAGCACCACAGGATCTATAGAAGG
EST: gi|298192597|gb|HO033031.1|HO033031
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209702005|gb|BW670542.1|BW670542
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCNTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|5127033|gb|AI748769.1|AI748769
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|298187217|gb|HO034366.1|HO034366
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|42723075|gb|CK768974.1|CK768974
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209700979|gb|BW664160.1|BW664160
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|298190237|gb|HO032358.1|HO032358
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209719885|gb|BW665968.1|BW665968
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|298195691|gb|HO044082.1|HO044082
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCCGGGCTTTCAGCACCACAGGATCTATAG
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAG
EST: gi|209704006|gb|BW667968.1|BW667968
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAG
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAG
EST: gi|298190379|gb|HO032500.1|HO032500
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAG
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAG
EST: gi|7926437|gb|AW832463.1|AW832463
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209702024|gb|BW652316.1|BW652316
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|18692999|gb|BM521847.1|BM521847
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|7042416|gb|AW472310.1|AW472310
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAAGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|7233339|gb|AW568686.1|AW568686
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|213600696|gb|DB968786.1|DB968786
EST:     GAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGT-AAGTTACCAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGG
genomic: GAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTAC-AGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGG
EST: gi|18735343|gb|BM528711.1|BM528711
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACA
EST: gi|213596341|gb|DB960242.1|DB960242
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGT-ACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAG
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAG
EST: gi|7146752|gb|AW508674.1|AW508674
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|213588522|gb|DB957491.1|DB957491
EST:     GAATTTTGATTGGAGAGAGAAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGC
genomic: GAATTTTGATTGGAGAGAGAAA-GGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGC
EST: gi|213591711|gb|DB969811.1|DB969811
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTA-GTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTC
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTC
EST: gi|42723107|gb|CK769006.1|CK769006
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209703710|gb|BW665008.1|BW665008
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|27423526|gb|CA935046.1|CA935046
EST:     TTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: TTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|213607762|gb|DB959101.1|DB959101
EST:     AGAATTTTGATTGGAGAGAGAAAG-AGCTGTCACCGAAGTTA-GTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTC
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTC
EST: gi|298176860|gb|HO026867.1|HO026867
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|7233761|gb|AW569104.1|AW569104
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAANGG
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAA-GG
EST: gi|7146377|gb|AW508299.1|AW508299
EST:     AGAATNTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAA                         GGTAGATGTGGATCATGCTGGGCTTTC
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTC
EST: gi|7146349|gb|AW508271.1|AW508271
EST:     GAATATTGATTGGAGAGAGAAAGG-GACTGTCACCGAAGTTAAGTTACAC                         GGTAGATGTGGATCATGCTGGACTTTCAGCACCACAAGATCTTTAGAAGGG
genomic: GAATTTTGATTGGAGAGAGAAAGGAG-CTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGG-
EST: gi|209697263|gb|BW675474.1|BW675474
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACA
EST: gi|7233737|gb|AW569081.1|AW569081
EST:     AGAATTNTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTNTCAGCACCACA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACA
EST: gi|6915817|gb|AW397347.1|AW397347
EST:     AGAATGTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAAGG
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAA-GG
EST: gi|209703088|gb|BW661589.1|BW661589
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209700584|gb|BW670414.1|BW670414
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209726856|gb|BW672531.1|BW672531
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCA
EST: gi|7232909|gb|AW568261.1|AW568261
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTNTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|14126460|gb|BG790898.1|BG790898
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGA
EST: gi|7686356|gb|AW757004.1|AW757004
EST:     GGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: GGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|213620250|gb|DB967537.1|DB967537
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         ---A--TGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209707466|gb|BW664925.1|BW664925
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|42722541|gb|CK768440.1|CK768440
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|7147031|gb|AW508953.1|AW508953
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209708800|gb|BW657129.1|BW657129
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|24205793|gb|BU965046.1|BU965046
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209702618|gb|BW673201.1|BW673201
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|298163407|gb|HO012140.1|HO012140
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGC
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGC
EST: gi|209724724|gb|BW651467.1|BW651467
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|213600810|gb|DB968816.1|DB968816
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|213595125|gb|DB972059.1|DB972059
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCAC
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCAC
EST: gi|298170066|gb|HO018690.1|HO018690
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAG
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAG
EST: gi|298175913|gb|HO015318.1|HO015318
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCGTGCTGGGCTTTCAGCACCA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCA
EST: gi|213601424|gb|DB968726.1|DB968726
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|26267937|gb|CA819000.1|CA819000
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209711750|gb|BW676889.1|BW676889
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|27423545|gb|CA935065.1|CA935065
EST:     ATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: ATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|298174071|gb|HO017407.1|HO017407
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|298167409|gb|HO012672.1|HO012672
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|7233316|gb|AW568663.1|AW568663
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209722204|gb|BW672402.1|BW672402
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|7233002|gb|AW568353.1|AW568353
EST:     AGAATTNTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTNTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|298173614|gb|HO016950.1|HO016950
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209715110|gb|BW677153.1|BW677153
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACA
EST: gi|213597243|gb|DB962489.1|DB962489
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAG
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAG
EST: gi|298188199|gb|HO034892.1|HO034892
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209699483|gb|BW667671.1|BW667671
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|42722945|gb|CK768844.1|CK768844
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209719597|gb|BW651022.1|BW651022
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATACAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|213601448|gb|DB968736.1|DB968736
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209722969|gb|BW668811.1|BW668811
EST:     AGA-TTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGT-AAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCA
genomic: -GAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCA
EST: gi|151409789|gb|EV279597.1|EV279597
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|7926621|gb|AW832647.1|AW832647
EST:     AGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209713530|gb|BW681533.1|BW681533
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|298173957|gb|HO017293.1|HO017293
EST:     GATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: GATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
EST: gi|209728769|gb|BW666819.1|BW666819
EST:     AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAG                         GGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA
genomic: AGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacga ... ttggatacagGGTAGATGTGGATCATGCTGGGCTTTCAGCACCACAGGATCTATAGAAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAATGCCGCCGGCGGTATTGCGCCGCCGTTGGAGGTGGACGGGCTGCCGGAGAATTTTGATTGGAGAGAGAAAGGAGCTGTCACCGAAGTTAAGTTACAGgtgtgtacgagttaagactttagtcttatttctatgaaaattcatgttgttatgatttttaaggtattactattatggttggtccaagaataaggccgtc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT