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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCAGGAAGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTCCTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtaccttttactgcaacttgtctaagcaactactttatactgtgctagagacaaggtctggacagttcaagtttgtttaaggccatcgtttcttgatgag...

Basic information

species Glycine max
transcript GLYMA10G34950.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34950.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G25670.1 (Arabidopsis thaliana), 5'ss of exon 1
AGAGCAGGAAGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTCCTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtaccttttactgcaacttgtctaagcaactactttatactgtgctagagac--aaggtctggacagttcaagtttgtttaaggccatcgtttcttgatgag
||| || |||||||| |||||  | |||||||| |||||||||||||| |||||||| || ||||| ||||| |||||||||||||||||||| ||||||||   || |  | |    |  | ||     |  ||||| || | ||||  ||    | | |    |   ||  || ||||  |   |  |  | |||  || 
AGAACAAGAAGCTCTTTACTCAGCTATTCAAGGGTTTGTTGGTGATTCTTGGAATGGTTCTGATCTTTATCCTGATCCTTGTGGTTGGACTCCTATTCAGgttttttgttttactttcttacaaaatctatgatttattcttttctagttacttgtgatttcttgaacacattttagtttctg-ttaaagaattttggaga-

upper sequence: GLYMA10G34950.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G13230.1 (Arabidopsis thaliana), 5'ss of exon 1
AGAGCAGGAAGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTCCTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtaccttttactg----caacttgtctaagcaact-actttatactgtg-ctagagacaaggtctggacagttcaagtttgtttaaggccatcgtttcttgatgag
||| |  |||||  | |||||  | |||||||| |||||||||||||| ||||| || || | ||||||||| |||||||||||||||||||||||||||||   | ||||      |   ||   |||  ||||  ||||||| | |  ||||||  | | | || || || |||||  ||         || |    |      
AGAACGTGAAGCCTTGTACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTATCCTGATCCTTGTGGTTGGACTCCAATTCAGgtttttcttacaagtctctctttccttaaaaaacttgctttatagtttctctagagttatgttttgtacggt-caagtaagtccttaattgtcatagactc-----

upper sequence: GLYMA10G34950.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G68780.1 (Arabidopsis thaliana), 5'ss of exon 1
AGAGCAGGAAGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTCCTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtaccttttactgcaacttgtctaagcaactactttatactgtgctagagacaaggtctggacagttcaagtttgtttaaggccatcgtttcttgatgag--------------------------------------------------------
|||||| |  ||||||||||| ||||||||||||||||||||||| || |||||||||||  |||| ||||| || |||||||| |||||||| || ||||| | || |      |||  |||  |    |   | | |     | | | || |  |  | |  |||  |      | |||   ||  ||  |  ||  |                                                        
AGAGCAAGCTGCTCTATACTCTACCATTCAAGGCTTTGTTGGTGAATCTTGGAATGGCTCTTATCTTTATCCTGACCCTTGTGGCTGGACTCCTATCCAGgtcctttctctcatcactattctttgattatcaataaaaaacaacaaaaaactatcttagtaatgttttaagcctatcaagattatgattattgaattcggaagccgttgaaaatgttgagtagctgatgtaattctctgttgtttaactctgcag

upper sequence: GLYMA10G34950.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g02800.t01 (Vitis vinifera), 5'ss of exon 1
AGAGCAGGAAGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTCCTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtaccttttact-----gcaacttgtctaagcaactactttatactgtgctagagacaaggtctggacagttcaagtttgtttaaggccatcgtttcttgatgag
|||||| ||||| || ||||| || ||||| || || || |||   |  |||||||||||||||||||| ||||| || || || |||||||| || ||||||   ||  |          |||    | |  ||   |||    ||| || || ||||||  | ||   ||    || ||  || |  |    ||   ||||  
AGAGCAAGAAGCCCTGTACTCTACTATTCAGGGGTTCGTGGGTACGTGGTGGAATGGCTCAGATCTCTACCCAGACCCGTGCGGGTGGACTCCTATACAGgtatgattaccctatgaatggcttcctaacgataccctttttctttgtacttgatacaaggctttgaggttttctcttagtccaatgaaaa---ttacagatg--