Sequence
atgc intronic sequence ATGC exonic sequenceCTTCCTCCTCTCCTATGGCGTCAGAGTCGGCATTGGCATACTCCTCCGCGCCTTCAAGCTTGTTCGAGGCCAATCCTACTCCTCTCTCCTTGATCTCAAGgtcagttcatgtcaaatcagggttccgattctccgttctttttccgtttcttaacaacattgatttttgtacttcactcaaatttttgtccacgtgacag...
Basic information
species | Glycine max |
transcript | GLYMA10G33510.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G33510.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os07g31260.1 (Oryza sativa), 5'ss of exon 1
CTTCCTCCTCTCCTATGGCGTCAGAGTCGGCATTGGCATACTCCTCCGCGCCTTCAAGCTTGTTCGAGGCCAATCCTACTCCTCTCTCCTTGATCTCAAGgtcagttcatgtcaaatcagggt-tccgattctccgttctttttccgtttcttaacaacattgatttttgtacttcactcaaatttttgtccacgtgacag-
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CTTCCTGCTCTCCTACGGCGTCCGGGTCGGCATCGGCATCCTCCTCCGCGCCTTCAAGCTCGCCCGCCGCAGATCCTACTCCTCCCTCCTCGACCTCAAGgtcctccttgctcctctcctcctacctgaatttgcaaatttctttcggttagtgctca-actgcgccccatattagatt-agtttagtttggacggaattat
upper sequence: GLYMA10G33510.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G175799_T02 (Zea mays), 5'ss of exon 1
CTTCCTCCTCTCCTATGGCGTCAGAGTCGGCATTGGCATACTCCTCCGCGCCTTCAAGCTTGTTCGAGGCCAATCCTACTCCTCTCTCCTTGATCTCAAGgt-cagttcatgtcaaatcagggttccgattctccgttctttttccgtttcttaacaacattgatttttgtacttcactcaaatttttgtccacgtgacag-
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CTTCCTGCTTTCGTACGGTGTCCGCGTCGGCATCGGCATCCTCCTCCGCGCCTTCAAGCTCGTGCGCCGCAGGTCCTATGGCTCGCTCCTCGACCTTAAGgtactcctcctgttacttcgcatcgtggcgtaattagatcggctgggatgacagatta-atcggctgccggaattcagttgagagcttgggattg-gatatg
upper sequence: GLYMA10G33510.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 1
CTTCCTCCTCTCCTATGGCGTCAGAGTCGGCATTGGCATACTCCTCCGCGCCTTCAAGCTTGTTCGAGGCCAATCCTACTCCTCTCTCCTTGATCTCAAGgtcagttcatgtcaaatcagggttccgattctccgttctttttccgtttcttaacaacattgatttttgtacttcactcaaatttttgtcca-cgtgacag-
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CTTCCTCCTCTCCTACGGCGTTAGAGTCGGTATCGGAATTCTTCTCCGGGCCTTCAAGCTCGTCCGGAGGCAATCATATTCGTCGCTTCTCGATCTCAAGgttaggcgac-tgtgttgtttgtttggtgcatttgtgtttgtctaggttttgaattatgt-ggtggtggaaggagtttctgatagctacagagtttggtgatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10842826|gb|BF066175.1|BF066175EST: CAAGCTTGTTCGAGGCCAATCCTACTCCTCTCTCCTTGATCTCAAG CAACTTGTTTCAGAAAAAGATCTGATAGTAAGGGAAGAAGCATGCCGCATT
genomic: CAAGCTTGTTCGAGGCCAATCCTACTCCTCTCTCCTTGATCTCAAGgtcagttcat ... ttgtttccagCAACTTGTTTCAGAAAAAGATCTGATAGTAAGGGAAGAAGCATGCCGCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCCTCCTCTCCTATGGCGTCAGAGTCGGCATTGGCATACTCCTCCGCGCCTTCAAGCTTGTTCGAGGCCAATCCTACTCCTCTCTCCTTGATCTCAAGgtcagttcatgtcaaatcagggttccgattctccgttctttttccgtttcttaacaacattgatttttgtacttcactcaaatttttgtccacgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC