Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCGAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACCACCTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctttcttattatcatttatttctcttcgttcaggatcgtactagcaattcaagttcatacgttctgtagtagtagtagtagtagtaaattcct...

Basic information

species Glycine max
transcript GLYMA10G25670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G25670.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g09210.1 (Oryza sativa), 5'ss of exon 1
TCCCGAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACCACCTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctttcttattatcatttatttctcttcgttcaggatcgtactagcaattcaagtt---catacgttctgtagtagtagtagtagtagtaaattcct
|||| | |||||| ||||||||| | |||||||||||||| ||||||||||| ||| | ||||| ||||||||||| |||||||| |||||| ||||  ||||  |||    |    |||  |  ||    |    |     ||||  ||     ||   ||   |     ||| || |   | | |        |||     
TCCCCACCAAGGGGCCCAGCGCCATCGCCATCTTCCTCACTACCTTCGGCGCCTTCGCCTGGGGGATGTACCAGGTTGGCCAGGGGAACAAGGTCCGCCGgtaagttcgccttgcgcatccatgtttatgttaaactgcaattcgttttactgtgtctgtttagccgcgaattccgttggtatgggacacccgccaaaaa---

upper sequence: GLYMA10G25670.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G004172_T01 (Zea mays), 5'ss of exon 1
TCCCGAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACCACCTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtacttt--ctttcttattatcatttatttctcttcgttcaggatcgtactagcaattcaagttcatacgttctgtagtagtagtagtagta-gtaaattcct
|||| | |  ||| |||||||||   ||||||||||||||||||||||| |||||| | |  ||||||||||||||||||||||| |||||| ||||  ||||  |   | |   | || |   | |     |||  || |   | |   ||| |  | |    | |       |    | ||  | | ||| | ||||    
TCCCCACCTCGGGGCCCAGCGCCACCGCCATCTTCCTCACCACCTTCGGTGCTTTCGCATATGGCATGTACCAGGTCGGCCAGGGGAACAAGGTCCGCCGgtaagtgggcatctcttttttttgtcaggcagcttgcttgaaattggcggtagtatgttataagcttggaaataggttaactatgattcgtacgcaaatg---

upper sequence: GLYMA10G25670.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G070716_T02 (Zea mays), 5'ss of exon 1
TCCCGAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACCACCTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctttcttattatcatttatttctcttcgttcaggatcgtactagcaattcaagttcatacgttctgtagtagtagtagtagtagtaaattcct--
| || | |  |||||||||||||  |||||||||||||||  |||||||||| ||| | |  ||||||||||||||||| ||||| |||||| | ||  ||||  | |   || |    ||  |  |||  ||        ||    ||    ||   | ||  |       | ||      |   | | ||  ||      
TTCCCACCTCGGGCCCCAGCGCCACTGCCATCTTCCTCACGGCCTTCGGCGCCTTCGCGTATGGCATGTACCAGGTCGGTCAGGGGAACAAGGTGCGCCGgtaagtgcgcgctca--gccagctcattcagttgcccgcctattacgctgcgcatctcattttttggcagaggcagcttgctttaaattggtttatgttata

upper sequence: GLYMA10G25670.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G070716_T01 (Zea mays), 5'ss of exon 1
--------TCCCGAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACCACCTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctttcttattatcatttatttctcttcgttcaggatcgtactagcaattcaagttcatacgttctgtagtagtagtag-tagtagtaaattcct--
        | || | |  |||||||||||||  |||||||||||||||  |||||||||| ||| | |  ||||||||||||||||| ||||| |||||| | ||  ||||  | |   || |    ||  |  |||  || |  |     | || || |  | |   |     | || | | | ||  | || | |   ||||||  |  
GCGCCGGATTCCCACCTCGGGCCCCAGCGCCACTGCCATCTTCCTCACGGCCTTCGGCGCCTTCGCGTATGGCATGTACCAGGTCGGTCAGGGGAACAAGgtgcgccggtaagtgcgcgctca--gccagctcattcagtt-gcccg----cctatta-cgctgcgcatct---cattttttggcagaggcagcttgctttaaattggttt

upper sequence: GLYMA10G25670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G04630.1 (Arabidopsis thaliana), 5'ss of exon 1
TCCCGAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACCACCTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctttcttattatcatttatttctcttcgttcaggatcgtactagcaattcaagttcatacgttctgtagtagtagta-gtagtagtaaattcct---
|  | || | ||| || || ||  | ||||| |||||  ||   |  || || ||  ||||||| |||||||||||||||||||| ||||| ||||| |||||    |   ||| | ||   |  ||    ||   |||   |         ||||| || ||           | ||||  |  | |||  |  ||  |    
TATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGgtaagaacga-cttgtaatagctcgttcacatt---tcaatttttcctctaaaattcgagatcgccttggtaaaattagtgttgtggagtgattgatgaccata

upper sequence: GLYMA10G25670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G33220.1 (Arabidopsis thaliana), 5'ss of exon 1
TCCCGAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACCACCTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctttcttattatcatttatttctcttcgttcaggatcgtactagcaattcaagttcatacgttctgtagtagtagtagtagtagtaaattcct----
|| | |||| ||| || |||||| | || || ||||| |||   | ||| |||||  |||||||||||||||| || || ||||||||||| ||||| ||||| ||   |  | |  ||     ||||   || | | ||| |  |        |  || ||       | ||   | | | |  ||  ||  ||||       
TCTCCAACACGGGACCTAGCGCCATGGCTATTTTCCTTACCGTTTCCGGTGCTTTTGCTTGGGGCATGTACCAAGTTGGTCAGGGCAACAAAATCCGCAGgtaattagataatgag-atgtggaatttgagtttggttaggcttttctctattgtgaaattttgagtaatttgggattg-aatctta--agacaatttgggatt

upper sequence: GLYMA10G25670.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0005g04970.t01 (Vitis vinifera), 5'ss of exon 1
TCCCGAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACCACCTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtact-ttctttcttattatcatttatttctcttcgttcaggatcgtactagcaattcaagttcatacgttctgtagtagtagtagtagtagtaaattcct
| |||| ||| || ||||| ||| | |||||||| ||  || || |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||   ||||   ||  |||| ||  | | | ||   |||      |  | ||     ||||  | | |      | |  ||||   | |  || |||   
TTCCGACCAAAGGTCCCAGTGCCATGGCCATCTTTCTAGCCGCCGTCGGTGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAAGGCAACAAGATCCGGAGgtaaaattctactttcatatctttgctgtttgtttcgtcatctgtttggttgctgagaaagtg-aaatggaagaaattgatagtttgaatcttagattttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193537279|gb|FK497156.1|FK497156
EST:     GC-TTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGG                         GGCCCTGAAGGAAGAAAAAATATGCTGCCCGCCGATCCATACTGCCCGTG
genomic: GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAA-Ggtactttctt ... tttcctatagGGCCCTGAAGGAAG-AAAAATATGCTGCCCGCCGATCCATACTGCCCGTG
EST: gi|209708946|gb|BW653487.1|BW653487
EST:     GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAG                         GGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
genomic: GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctt ... tttcctatagGGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
EST: gi|18848706|gb|BM567818.1|BM567818
EST:     ACCAGGTCGGCCAGGGCAACAAGATCCGAAG                         GGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
genomic: ACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctt ... tttcctatagGGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
EST: gi|10846457|gb|BF071353.1|BF071353
EST:     GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGAGCAACAAGATCCGAAG                         GGCCCTGAAAGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
genomic: GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctt ... tttcctatagGGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
EST: gi|193651268|gb|FK599003.1|FK599003
EST:     GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGG                         GGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGC
genomic: GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAA-Ggtactttctt ... tttcctatagGGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGC
EST: gi|10846463|gb|BF071356.1|BF071356
EST:     GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAG                         GGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
genomic: GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctt ... tttcctatagGGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
EST: gi|214008555|gb|DB988216.1|DB988216
EST:     GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAG                         GGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
genomic: GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctt ... tttcctatagGGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
EST: gi|7639656|gb|AW733974.1|AW733974
EST:     GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAG                         GGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
genomic: GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctt ... tttcctatagGGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
EST: gi|16348384|gb|BI973979.1|BI973979
EST:     GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAG                         GGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT
genomic: GCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctt ... tttcctatagGGCCCTGAAGGAAGAAAAATATGCTGCCCGCCGATCCATACTGCCCGTGCT