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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCAGCAGATCACCGAGGCGTGGGCTGTGGCTCAGAGATTGGACCTTGTTGGGCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtatatttgctctgcagcgagaaatgttttttttttttattttttatatctgtaggaatccaacatgggatcaggggtttacaacactcacacacttgct...

Basic information

species Glycine max
transcript GLYMA10G24620.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G24620.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0051g00650.t01 (Vitis vinifera), 5'ss of exon 1
GGCTCAGCAGATCACCGAGGCGTGGGCTGTGGCTCAGAGATTGGACCTTGTTGGGCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtatatttgctctgcagcgagaaat--gttttttttttttattttttatatctgtaggaatccaacatgggatcaggggtttacaacactcacacacttgct
 || ||||||||||| ||||| ||||  |||||  || | ||||| || || ||||| ||||| |||||||||||||||||  |  | || |||||||||||||    |      || ||  |    |||      ||| |||||| |    | | |      |   | |  | | | ||| |  | |     |   ||   
TGCCCAGCAGATCACGGAGGCCTGGGGGGTGGCGGAGCGCTTGGATCTGGTCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcagggctattagtgaatacccagttgggaaatttgatttttgactagttttgcttgtgatggttgattaatgtgttcattaaagctttatttttt--