1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAACCCTAGGGCCTTCTCCTCCGCTGCTTCCACTCCGATCCGCGCCACTCTCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcctctctcataaatcattgcgcccttttcaatttctttcgattctgttgccttcattctttttattgtgtggttttgatttacaatagttgac...
species | Glycine max |
transcript | GLYMA10G06590.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|192302073|gb|FG993457.1|FG993457
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|254329852|gb|GR839405.1|GR839405
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|298195797|gb|HO044188.1|HO044188
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|14259098|gb|BG882006.1|BG882006
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|151393897|gb|EV263768.1|EV263768
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|19268871|gb|BM885127.1|BM885127
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|7796143|gb|AW781540.1|AW781540
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTTCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|213602099|gb|DB962592.1|DB962592
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|298166544|gb|HO009983.1|HO009983
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|209725272|gb|BW672747.1|BW672747
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|192328451|gb|FK020725.1|FK020725
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|209700402|gb|BW664415.1|BW664415
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|7478024|gb|AW666107.1|AW666107
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: CTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|8286498|gb|BE024057.1|BE024057
genomic: CTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|298171951|gb|HO021543.1|HO021543
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|209702969|gb|BW656039.1|BW656039
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|8285773|gb|BE023332.1|BE023332
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAEST: gi|37996619|gb|CF808208.1|CF808208
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
EST: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAG ATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
genomic: TCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcct ... taatacttagATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCCTAGGGCCTTCTCCTCCGCTGCTTCCACTCCGATCCGCGCCACTCTCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGgtcccttcctctctcataaatcattgcgcccttttcaatttctttcgattctgttgccttcattctttttattgtgtggttttgatttacaatagttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttttc