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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCGCAGTCGCTGAAGAAGCTAAGCTTCAAGTCTCTGAAGCGCGCTCTCGATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGgtttcgcttcttttccccttttcctcactctctcggttatacgctgactcctgattctgattttgattttctcgtgcag

Basic information

species Glycine max
transcript GLYMA09G04910.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04910.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g21990.1 (Oryza sativa), 5'ss of exon 2
AGCCGCAGTCGCTGAAGAAGCTAAGCTTCAAGTCTCTGAAGCGCGCTCTCGATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGgtttcgcttcttttccccttttcctcactctctcggttat------acgctgac--tcctgattctgattttgattttctcgtgcag------------------------
|||||||||||||||||||||| ||| ||||||| || |||||| | | ||| |||||| | |||| ||||   | ||||   ||||||||| | || ||||    | |     | ||  |  ||  | |  ||| | |       || || ||    ||| ||   |   || ||  | | |   |                        
AGCCGCAGTCGCTGAAGAAGCTGAGCCTCAAGTCGCTCAAGCGCTCGCACGACCTCTTCGCGCCCACCCACTCCCTCCTCTTCACTCCCGATCCGGAGAGgtaaatcctgcgcgctcccctctctgcccccatcgttcaccctagaaccctaacggcgctgtttgctaaactgtttcccccctttggtttggttgttgtggcggacggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213619621|gb|DB965567.1|DB965567
EST:     GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAG                         CAAGAAAATACGCACTAGCCACAAG
genomic: GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGgtttcgcttc ... tctcgtgcagCAAGAAAATACGCACTAGCCACAAG
EST: gi|192331343|gb|FK019632.1|FK019632
EST:     GATCTCTTCTCTCCCGTCCACGGACACCTCGCTACTCCCGATGCCGAAAG                         CAAGAAAATACGCACTAGCCACAAG
genomic: GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGgtttcgcttc ... tctcgtgcagCAAGAAAATACGCACTAGCCACAAG
EST: gi|208316772|gb|GE117948.1|GE117948
EST:     GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAG                         CAAGAAAATACGCACTAG
genomic: GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGgtttcgcttc ... tctcgtgcagCAAGAAAATACGCACTAG
EST: gi|19934922|gb|BQ079952.1|BQ079952
EST:     GATCTCTTCTCTCCCATCCACGTTCACCTCGCTACTCCCGATGCCGAAAG                         CAAGAAAATACGCACTAGCCACAAG
genomic: GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGgtttcgcttc ... tctcgtgcagCAAGAAAATACGCACTAGCCACAAG
EST: gi|12496378|gb|BG047034.1|BG047034
EST:     GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAG                         CAAGAAAATACGCACTAGCCACAAG
genomic: GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGgtttcgcttc ... tctcgtgcagCAAGAAAATACGCACTAGCCACAAG
EST: gi|8827691|gb|BE211421.1|BE211421
EST:     GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAG                         CAAGAAAATACGCACTAGCCACAAG
genomic: GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGgtttcgcttc ... tctcgtgcagCAAGAAAATACGCACTAGCCACAAG
EST: gi|213603558|gb|DB962704.1|DB962704
EST:     GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAG                         CAAGAAAATACGCACTAGCCACAAG
genomic: GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGgtttcgcttc ... tctcgtgcagCAAGAAAATACGCACTAGCCACAAG
EST: gi|209725601|gb|BW657981.1|BW657981
EST:     GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAG                         CAAGAAAATACGCACTAGCCACAAG
genomic: GATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGgtttcgcttc ... tctcgtgcagCAAGAAAATACGCACTAGCCACAAG