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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGACAATTTCTTCATAGTGCAGATCTTTCAAAAAATGCACGAAATGGAAATCAAACCAAATGTTGTCACATTTTCAGCCATCTTGAATGCTTGCAGgtagcaaataactatccgatatttgtttttgtcttacaccattctattttatatagtcacttacatgttaccccagaatagaagaggtaaatggtataag...

Basic information

species Glycine max
transcript GLYMA08G28160.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G28160.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G432850_T01 (Zea mays), 5'ss of exon 1
GACAAGACAATTTCTTCATAGTGCAGATCTTTCAAAAAATGCACGAAATGGAAATCAAACCAAATGTTGTCACATTTTCAGCCATCTTGAATGCTTGCAGgtagcaaataactatccgatatttgtttttg-tcttac-accattctattttatatagtcacttacatgttacc-ccagaatagaagaggtaaatggtataag
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CACAGGAACTATTTTTCATTCTGGAATTGTTTCAGAAGATGGTCCAGCAGGGTGTACGGCCAAATGTTGTAACATTTTCTGCGATCCTGAATGCTTGCAGgtactcttcatcatttcattggagacttcagatgccactgctgttgtagctctttgtatcgtgccagtgtttctataaaaatacactgtgtcagtcgtaa---

upper sequence: GLYMA08G28160.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G31400.1 (Arabidopsis thaliana), 5'ss of exon 1
GACAAGACAATTTCTTCATAGTGCAGATCTTTCAAAAAATGCACGAAATGGAAATCAAACCAAATGTTGTCACATTTTCAGCCATCTTGAATGCTTGCAGgtagcaaataactatccgatatttgtttttgtcttacaccattctattttata--tagtcacttacatgttaccccagaatag----aagaggtaaatggtataag----------------------------------------------------
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TGCAGGAGCTCTCCTGTATATTGGAAGTTTTCCGCAAAATGCATCAGCTGGAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAGgtt-tgtttctcctttggatcctctttttgaagtta-acgagtgaaagatatgaccaaatagtt-tgggttttcctagattagctctatgtggttt-tgctgtttgactccattttctgtgggatacttattttgcttacacgtttgtatctatgtag

upper sequence: GLYMA08G28160.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0005g01660.t01 (Vitis vinifera), 5'ss of exon 1
GACAAGACAATTTCTTCATAGTGCAGATCTTTCAAAAAATGCACGAAATGGAAATCAAACCAAATGTTGTCACATTTTCAGCCATCTTGAATGCTTGCAGgtagcaaataactatccgatatttgtttttgtcttacaccattctattttatatagtcacttacatgttaccccagaatagaagaggtaaatggtataag--
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GACAGGAAATTTTATGCATCTTGGCGGTCTTCCACAAGATGCATGAGCTGGACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAGgta-tgcttcttcacctgatact-gcctatctttcaccaaattgaggaccttgtcatgtgaaaaatattgaatccagaaatgtgggtttggtgtgactaatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192320044|gb|FK013036.1|FK013036
EST:     GAAATCAAACCAAATGTTGTCACATTTTCAGCCATCTTGAATGCTTGCAG                         TTGTTGTGAGACATATCAAGATGCTTCAAAGTTGTTAGATGCACTCCCAGT
genomic: GAAATCAAACCAAATGTTGTCACATTTTCAGCCATCTTGAATGCTTGCAGgtagcaaata ... ttgtatgcagTTGTTGTGAGACATTTCAAGATGCTTCAAAGTTGTTAGATGCACTCCGAGT