Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGAGGAGAATGAGGATCGCCCAGCCAAGCCTCGTCATTTTGGCGTCACCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctcttcatcactctgttttgattgagcttaacagttaagtgattatcatggtggatcatctttacaacatgatccttaatcttaattaattgctg...

Basic information

species Glycine max
transcript GLYMA08G06660.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396625|gb|EV266502.1|EV266502
EST:     CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG                         GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: gi|151394464|gb|EV264335.1|EV264335
EST:     CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG                         GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: gi|151401140|gb|EV270954.1|EV270954
EST:     CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG                         GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: gi|298166286|gb|HO009257.1|HO009257
EST:     CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG                         GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: gi|9258852|gb|BE346999.1|BE346999
EST:     CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG                         GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: gi|213613975|gb|DB960954.1|DB960954
EST:     CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG                         GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: gi|298163532|gb|HO012265.1|HO012265
EST:     CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG                         GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: gi|151394843|gb|EV264714.1|EV264714
EST:     CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG                         GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA